UFO05242.5prime Sequence
1095 bp (994 high quality bases) assembled on 2009-07-06
> UFO05242.5prime
CAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCGCTTTAGTG
CTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAACCACGCAG
CAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTCCGGCGCCG
TCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCTGCTCCACA
TCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGATCACAAGGG
TCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGCCGGTGATG
GCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCACACTCCCCC
AACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAACTTCGAACG
CAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCTAATCGAGC
TGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGTTCGGTCAT
CGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTACAACGAGAT
CAAGACGTGGCCGCACTGGAGGCAAAACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCAGCGCATCAGCACTGTCGCTTGCGTATATATTTGCCCATG
GTGAAACGGGGCGAGAGTGTCCATATGCCACGTTTAATCAAACTGTGAAC
TCACCAGGATGCTGAACGAAAACTTTTCATAACCTTAGATAGGCAGTTTC
CGTAACGCCCATCTGCCAATATGGTGACTGCGATCGAGGATACTC
UFO05242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-RA | 623 | CG9681-RA | 7..576 | 9..578 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16727346..16727862 | 578..62 | 2585 | 100 | Minus |
| 3L | 28110227 | 3L | 16727929..16727983 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:24 has no hits.
UFO05242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:39 Download gff for
UFO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 36..613 | 9..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:47 Download gff for
UFO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 6..584 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:43 Download gff for
UFO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 6..584 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:43 Download gff for
UFO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16727338..16727860 | 64..584 | 99 | <- | Minus |
| 3L | 16727929..16727983 | 9..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:47 Download gff for
UFO05242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16720438..16720960 | 64..584 | 99 | <- | Minus |
| arm_3L | 16721029..16721083 | 9..63 | 100 | | Minus |
