UFO05243.5prime Sequence
1136 bp (1009 high quality bases) assembled on 2010-12-10
> UFO05243.5prime
CAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATGCCACGTTG
GTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGCCTCTATTC
AGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACATAAAGAATC
CCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACAGCATCGAG
CCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCGCCATACAC
GGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCGCCGGCAGG
AGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGCTGATGCCG
GGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTCTTTGATCC
CGAGCGGCCCGTTCGCCCACACAAGTACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACGCAC
ATCTGCGATATATGTGTAGAACTGCGGAAATCGTCGTGTATCCCTCCAGA
GCGATGAAAACGTTCAGTTGCTCATGAAACGTGTAACAGGGTGAACTATC
ATTCACAGCTCACGTCTTTCATTGCATACGAATCCGAGACCTCATCAGCC
GGCAGATGATAGCCGATAACTGGCTTATTTCTTCGG
UFO05243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS18C-RA | 528 | CG9688-RA | 38..458 | 8..428 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30424100..30424486 | 42..428 | 1935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:17:45 has no hits.
UFO05243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:17 Download gff for
UFO05243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18C-RA | 38..467 | 8..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:15 Download gff for
UFO05243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18C-RA | 38..467 | 8..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:17 Download gff for
UFO05243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18C-RA | 38..467 | 8..439 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:17 Download gff for
UFO05243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30424011..30424045 | 8..42 | 100 | -> | Plus |
| 3R | 30424101..30424486 | 43..428 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:15 Download gff for
UFO05243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26249733..26249767 | 8..42 | 100 | -> | Plus |
| arm_3R | 26249823..26250208 | 43..428 | 100 | == | Plus |
