UFO05245.5prime Sequence
1116 bp (994 high quality bases) assembled on 2009-07-06
> UFO05245.5prime
CAGTCGACATGTCCGAATTGCAGGAATTCAACCAGGCGGCCGAAGATGTT
AAGAACCTAAACACCACACCCGGGGACAATGACCTTTTGGAGCTCTACAG
CTTGTACAAACAGGCCACTGTGGGGGATTGCAATACAGATAAGCCCGGCT
TTCTGGACTTCAAGGGCAAGGCCAAGTGGGAGGCGTGGAACAACCGCAAG
GGAATGAGCAATACCGACGCCCAGGCCGCCTACATTACCAAGGTCAAGGC
ACTGATCGCTGCCGTTGGCCTGAAGTCAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTTCATTGCCAT
ACGAAATTCCGGATGAGCATTCATCAGCGGCCAAGAATGTGAATAAGCCG
ATAAACTTGTGCTTATTTTTTCTTTACGTCTTTAAAGCCGTAATATCCAG
CTGAACGGCTGTTAGTACTGAGCACTGACTGAAATGCCTCAAAGTTCTTC
CATGCATGGAGATACA
UFO05245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8498-RB | 525 | CG8498-RB | 128..397 | 9..278 | 1350 | 100 | Plus |
| CG8498-RA | 491 | CG8498-RA | 94..363 | 9..278 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8161924..8162071 | 278..131 | 725 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8162123..8162240 | 138..21 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 844..913 | 124 | 67.6 | Plus |
UFO05245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:40 Download gff for
UFO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8498-RA | 65..334 | 9..278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:39 Download gff for
UFO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8498-RA | 94..363 | 9..278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:25 Download gff for
UFO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8498-RA | 94..363 | 9..278 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:25 Download gff for
UFO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8161924..8162063 | 139..278 | 100 | <- | Minus |
| 2L | 8162123..8162237 | 24..138 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:39 Download gff for
UFO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8161924..8162063 | 139..278 | 100 | <- | Minus |
| arm_2L | 8162123..8162237 | 24..138 | 100 | <- | Minus |
