UFO05246.5prime Sequence
1140 bp (1038 high quality bases) assembled on 2009-07-06
> UFO05246.5prime
CAGTCGACATGTATCTGATGTACACAATTAACGAAAACGGCGATCGCGTT
TACACCCTGAAGAAACGCACCGAGGATGGTCGTCCCACACTATCTGCTCA
TCCAGCACGTTTTTCACCGGAGGATAAGTACTCCCGCCAGAGGCTGACCA
TCAAGAAGCGCTTTGGACTGCTGCTCACCCAGAAGCCGGAGCCCATTTAC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG
CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGT
TTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCA
GCTCACCGTCTTTCATTGCCATACGAAATTCCCGGATGAGCATTCATCAG
CGGCAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTCTTTAC
GGTCTTTAAAAAGCCGTAATATCCAGCTGACGTCTGTTATAGTAACATTG
AGCACTGACTGAAATGCTCAAATGTTCTTTACGATGCATGGGATTTATCA
CGTCTATATCCAGTGATTTTTCTCATTTAGCTCTAGCTTCTGAAGATCCT
AACTCGAATAGCAACTTATACCGAAGCTTAAGACTTCCAA
UFO05246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7637-RA | 316 | CG7637-RA | 61..252 | 9..200 | 960 | 100 | Plus |
| CG12935-RB | 918 | CG12935-RB | 883..918 | 200..165 | 180 | 100 | Minus |
| CG12935-RA | 1200 | CG12935-RA | 1165..1200 | 200..165 | 180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10810620..10810759 | 200..61 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 10810823..10810876 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 769..836 | 123 | 68.1 | Plus |
UFO05246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:26 Download gff for
UFO05246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7637-RA | 15..211 | 9..206 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:20 Download gff for
UFO05246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7637-RA | 61..257 | 9..206 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:56 Download gff for
UFO05246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7637-RA | 61..257 | 9..206 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:56 Download gff for
UFO05246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10810620..10810757 | 63..200 | 100 | <- | Minus |
| 2R | 10810823..10810876 | 9..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:20 Download gff for
UFO05246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6698125..6698262 | 63..200 | 100 | <- | Minus |
| arm_2R | 6698328..6698381 | 9..62 | 100 | | Minus |
