UFO05247.5prime Sequence
1086 bp (985 high quality bases) assembled on 2010-12-10
> UFO05247.5prime
CAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAGATATGGAA
CTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAGAAAGTGGG
TCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGCGAACCACG
TGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGGTGACCCTT
CGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGGTTACAGCG
ACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGCACTGGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAG
GTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAACGTGTACACGGTGACACTATCCATATCACAGCTCACGTCTTCA
TGCATACGAAATCGATGAGCATCATCAGGCGGCAGATGTGATAAGCGATA
AACTGTGCTATTTTCTTACGTCTTTAAAGCGTATATCAGCTGACGGCTTG
TTAAGTAACTGGACACTGACTGAATGCTAATGGTCT
UFO05247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12589-RC | 1814 | CG12589-RC | 1394..1681 | 9..296 | 1440 | 100 | Plus |
| CG12589-RB | 471 | CG12589-RB | 51..338 | 9..296 | 1440 | 100 | Plus |
| CG12589-RA | 517 | CG12589-RA | 97..384 | 9..296 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5137190..5137477 | 296..9 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:17:42 has no hits.
UFO05247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:17 Download gff for
UFO05247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12589-RA | 87..384 | 1..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:13 Download gff for
UFO05247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12589-RA | 87..384 | 1..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:15 Download gff for
UFO05247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12589-RA | 87..384 | 1..296 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:15 Download gff for
UFO05247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5137190..5137487 | 1..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:13 Download gff for
UFO05247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 962912..963209 | 1..296 | 98 | | Minus |
