UFO05250.5prime Sequence
1130 bp (1013 high quality bases) assembled on 2009-07-06
> UFO05250.5prime
CAGTCGACATGACAATAAACAAGGAAACGGGAACCGATCCCGATCCTGGA
TATAAGCCTACGTTACGCAGTCAAGATAAGGCCGCCCTGAAGGAACTGCT
GCACACGCGTCTTGTGGAGTGCGGATGGCACAAGGACATTAAGGAAATGA
TACGAAACATCATCATGGAGCGCGGAGTGGACAATATAAACCGCGACCAA
CTGGCTGCCCAAATAGTCCCGCAAGCTCGCGCTTTGGTGCCTGAAGTCGT
CAAAAATGAGATGATGCTGCGCGTGCACGCCGCCCTCGATAAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTT
TTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA
AATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCA
TGGAAAACGGTGTAACAAGGTGAACACTATCCCATATCACCAGCTCACCG
TCTTTCATGCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAGATGT
GAATAAAGACGGATAAAACTTGGTGCTTATTTTTCTTACGTCTTTAAAAG
CGTAATATCAGCTGAACCGACTGTAAAGTAATGACACTGACTGAAATGCT
CAAATTTCTTACATGCATGGATATACACGG
UFO05250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e(y)2b-RB | 662 | CG14612-RB | 189..474 | 8..293 | 1430 | 100 | Plus |
| e(y)2b-RA | 559 | CG14612-RA | 86..371 | 8..293 | 1430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7094263..7094402 | 86..225 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 7094123..7094200 | 8..85 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 7094471..7094539 | 225..293 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:20 has no hits.
UFO05250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:43 Download gff for
UFO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14612-RA | 1..288 | 9..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:44 Download gff for
UFO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(y)2b-RA | 77..371 | 1..293 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:27 Download gff for
UFO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(y)2b-RA | 77..371 | 1..293 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:27 Download gff for
UFO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7094471..7094539 | 225..293 | 100 | == | Plus |
| 3R | 7094114..7094200 | 1..85 | 95 | -> | Plus |
| 3R | 7094263..7094401 | 86..224 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:44 Download gff for
UFO05250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2919836..2919922 | 1..85 | 95 | -> | Plus |
| arm_3R | 2919985..2920123 | 86..224 | 100 | -> | Plus |
| arm_3R | 2920193..2920261 | 225..293 | 100 | == | Plus |
