UFO05252.5prime Sequence
1139 bp (1020 high quality bases) assembled on 2009-07-06
> UFO05252.5prime
CAGTCGACATGGGTGAACGCTACAATATCCACAGCCAGCTGGAGCATCTA
CAAAGCAAGTACATCGGAACAGGACACGCGGATACCACAAAGTTCGAGTG
GCTAACAAATCAACATCGCGACTCCTTGGCCAGCTACATGGGTCACTACG
ATATTCTCAACTACTTTGCCATAGCGGAAAATGAATCGAAGGCACGAGTG
CGATTTAATCTGATGGAGCGAATGCTGCAGCCATGTGGGCCACCACCAGA
AAAGCTAGAGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATA
TATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATG
AAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTA
TCCCATATCACCAGCTCACGTCTTTCATTGCCATACGAAATTCCGGATGA
GCATTCATCAGCGGGCAGATGTGAATAAGCGATAAACTGGTGCTTATTTT
TCTTACGTCTTTAAAAGCGTATATCAGCTGACGTCTGTATAGTACATGGA
GCACTGACTGAATGCCTCAAATGTTCTTTACGATGCATGGAAATATCACG
TGAATTCAAGTGATTTTTCCCAATAGTCTAGTTGAGATC
UFO05252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..332 | 9..263 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015010..9015264 | 263..9 | 1275 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 832..899 | 123 | 68.1 | Plus |
UFO05252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:45 Download gff for
UFO05252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 9..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:46 Download gff for
UFO05252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 71..336 | 1..268 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:25 Download gff for
UFO05252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 71..336 | 1..268 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:05:25 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:05:46 has no hits.
