UFO05254.5prime Sequence
1137 bp (1044 high quality bases) assembled on 2009-07-06
> UFO05254.5prime
CAGTCGACATGAGCATCTATCACGACGAGGTGGAGATCGAGGACTTCGAG
TACGACGAGGAGGAGGAGATGTACTACTATCCCTGTCCATGCGGCGATCG
ATTTCAGATCTCCAAGGAGGAGCTAATCGAGGGCGAGGAGGTGGCCACCT
GTCCCAGCTGCTCCCTAGTCATCAAGGTCATATACGATCCGGAGATGTTC
AAAGCTGAGGAGGATGAAGAAAGTGCGCTGAACGAGAAGCTCGGCGACCT
GAAGCTCGAGAAGAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACA
CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGG
ATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCCGGATAAACTGG
TGCTTATTTTTTCTTTACGGTCTTTAAAAGGCGTATATCAGCTGACGCTG
TTATAGTACATTGAGCACTGACTGAATGCCTCAATGTTCTTACGATGCAT
GCAATATCACGGTGTATCAGGGAATTTTCCAATAGTC
UFO05254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14701-RA | 487 | CG14701-RA | 105..363 | 8..266 | 1295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11232016..11232125 | 8..117 | 550 | 100 | Plus |
| 3R | 32079331 | 3R | 11232192..11232269 | 115..192 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 11232340..11232415 | 191..266 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 835..902 | 123 | 68.1 | Plus |
UFO05254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:47 Download gff for
UFO05254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14701-RA | 1..261 | 9..270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:53 Download gff for
UFO05254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14701-RA | 96..366 | 1..270 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:31 Download gff for
UFO05254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14701-RA | 96..366 | 1..270 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:31 Download gff for
UFO05254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11232007..11232124 | 1..116 | 96 | -> | Plus |
| 3R | 11232194..11232268 | 117..191 | 100 | -> | Plus |
| 3R | 11232341..11232415 | 192..266 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:53 Download gff for
UFO05254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7057916..7057990 | 117..191 | 100 | -> | Plus |
| arm_3R | 7058063..7058137 | 192..266 | 100 | == | Plus |
| arm_3R | 7057729..7057846 | 1..116 | 96 | -> | Plus |
