UFO05258.5prime Sequence
1097 bp (976 high quality bases) assembled on 2009-07-06
> UFO05258.5prime
CAGTCGACATGGCCGACATCTTCACGACACTGCCGAAACGTCGGTTGGTA
CCCAACCTACTTAAGTCCATTATAATGGTCCTGGAGCATACTAGCCGACC
CATGACTGACACAGAGCTGAACATCTTCCTGGGCAGCCAGTACCAACGTA
ACGATCCGGAATTCTTTGCCCAAGTGCAAATCAATCTGCACGATGGCATC
GAAAGCGCCATTCTGAGGCGCCAGGGAAACCAGATTTCGCTGCTCGCTTG
GATCCTCACCAAACCGATGAACCTTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAACAAG
GTGACACTATCCATATCACAGCTCACGTCTTTCATGCATACGAAATCTGA
TGAGCATCATCAGCGGCAGATGTGATAAGCGATAAACTGTGCTATTTTCT
TACGTCTTTAAAGCGTATATCAGCTGACGCTGTTAGTTACATGAGCACTG
ACTGATGCTCAATGTCCTACATGCATGAATTCACGGAATCAGAATTT
UFO05258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15578-RA | 415 | CG15578-RA | 98..366 | 7..275 | 1345 | 100 | Plus |
| CG15577-RA | 508 | CG15577-RA | 139..338 | 44..243 | 475 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4277596..4277864 | 275..7 | 1345 | 100 | Minus |
| X | 23542271 | X | 4276663..4276862 | 243..44 | 475 | 82.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 1144..1189 | 942..986 | 119 | 76.1 | Plus |
UFO05258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:41 Download gff for
UFO05258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15578-RA | 1..270 | 9..278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:52 Download gff for
UFO05258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15578-RA | 92..370 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:46 Download gff for
UFO05258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15578-RA | 92..370 | 1..279 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:15:46 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:52 has no hits.
