UFO05260.5prime Sequence
1085 bp (983 high quality bases) assembled on 2010-12-10
> UFO05260.5prime
CAGTCGACATGTTTACTTTGTGGACACTGATTGAATCTTCACTCCTGTGC
CTGAATGCGGTGTGCATTCTGCACGAGGAACGCTTTCTGGCCAAGTTTGG
CTGGGGACGACAGGCGGGCCAGCAGGACTTTGGAGCACCTACGGCCAAGG
ATCAGGTGCTAAACCTCATTCGTTCCATACGCACAGTGGCCAAAATTCCC
CTGATATTCCTTAACATAATTGCGATTATATTTAAACTATTACTTGGTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTT
GCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGC
TCACGTCTTTCATTGCATACGAAATTCCAGATGAGCATCATCAGCGGGCA
GATGTGAATAACGCGATAAACTTGTGCTTATTTTCTTTACGTCTTAAAAG
CGTATATCAGCTGACGTCTGTTATAGTACATGAGCACTGACTGAATGCTC
GAATGTTCTTAGATGCATGGATTGCACGTTGTATC
UFO05260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32069-RA | 356 | CG32069-RA | 72..311 | 9..248 | 1200 | 100 | Plus |
| Blos2-RA | 645 | CG14145-RA | 606..645 | 248..209 | 200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11062291..11062389 | 195..97 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 11062456..11062543 | 96..9 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 11062176..11062228 | 248..196 | 265 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 817..884 | 123 | 68.1 | Plus |
UFO05260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:18 Download gff for
UFO05260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32069-RA | 72..311 | 9..248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:18 Download gff for
UFO05260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32069-RA | 72..311 | 9..248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:19 Download gff for
UFO05260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32069-RA | 72..311 | 9..248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:19 Download gff for
UFO05260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11062291..11062389 | 97..195 | 100 | <- | Minus |
| 3L | 11062456..11062543 | 9..96 | 100 | | Minus |
| 3L | 11062176..11062228 | 196..248 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:18 Download gff for
UFO05260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11055276..11055328 | 196..248 | 100 | <- | Minus |
| arm_3L | 11055391..11055489 | 97..195 | 100 | <- | Minus |
| arm_3L | 11055556..11055643 | 9..96 | 100 | | Minus |
