UFO05261.5prime Sequence
1100 bp (999 high quality bases) assembled on 2009-07-06
> UFO05261.5prime
CAGTCGACATGATAGAAATAACGTGTAACGATCGTCTTGGCAAGAAGGTG
CGCGTCAAGTGCAACCCGGACGACACGATTGGGGACCTCAAGAAACTAAT
CGCGGCACAAACGGGCACAAAGCACGAGAAGATTGTCCTGAAGAAGTGGT
ACACAATCTTCAAGGACCCGATTCGCCTATCTGACTATGAAATTCACGAT
GGCATGAATCTGGAACTTTACTACCAAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATA
CGAAATTCCGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCG
GATAAAACTTGTGCTTATTTTTCTTTACGTCTTTAAAGCGTATATCAGCT
GACGGTCTGGTTATAGTACATGAGCACTGACTGAAATGCCTCAATGTCCT
TACGATGCATGGGATATATCACGTGTATCATGATTTTCCAATTTAGCTCT
UFO05261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ubl-RA | 396 | CG3450-RA | 94..312 | 9..227 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6810201..6810341 | 186..46 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 6810095..6810135 | 227..187 | 205 | 100 | Minus |
| 2R | 25286936 | 2R | 6810397..6810437 | 49..9 | 205 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 796..863 | 123 | 68.1 | Plus |
UFO05261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:48 Download gff for
UFO05261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ubl-RA | 78..303 | 9..234 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:43 Download gff for
UFO05261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ubl-RA | 94..319 | 9..234 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:28 Download gff for
UFO05261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ubl-RA | 94..319 | 9..234 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:28 Download gff for
UFO05261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6810095..6810135 | 187..227 | 100 | <- | Minus |
| 2R | 6810201..6810339 | 48..186 | 100 | <- | Minus |
| 2R | 6810399..6810437 | 9..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:43 Download gff for
UFO05261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2697600..2697640 | 187..227 | 100 | <- | Minus |
| arm_2R | 2697706..2697844 | 48..186 | 100 | <- | Minus |
| arm_2R | 2697904..2697942 | 9..47 | 100 | | Minus |
