UFO05266.5prime Sequence
1162 bp (1039 high quality bases) assembled on 2009-07-06
> UFO05266.5prime
CAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGGCCGTGATC
CTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAATAACAACGA
CTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAAGAACAACT
ACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACATCTCCGCC
GTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCTCCTAGCCT
CTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCTTCGTGGTC
AGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTCGTGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAATAGGCCAGGTT
TTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA
AATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCAT
GGAAAACGTGTAACAGGGTGAACACTATCCCATATCACCAGCTCACCCGT
CTTTTCATTGCCATACGAAATTCCGATGAGCATTCATCAGCGGCAAATGT
GAATAAGCCGATAACCTTGTGCTATTTTTCTTACGTCTTTAAAGCCGTAT
AATCCAGCTGACGCTGTTTAGTAAATGGAGCACTGACTGAATGCCAAGTT
CTTCCAGTGCAA
UFO05266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13323-RB | 2562 | CG13323-RB | 39..376 | 7..344 | 1690 | 100 | Plus |
| CG13323-RA | 521 | CG13323-RA | 39..376 | 7..344 | 1690 | 100 | Plus |
| CG13324-RA | 511 | CG13324-RA | 37..374 | 7..344 | 1300 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13046881..13047218 | 344..7 | 1690 | 100 | Minus |
| 2R | 25286936 | 2R | 13049283..13049620 | 344..7 | 1300 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:55:44 has no hits.
UFO05266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:51 Download gff for
UFO05266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13323-RA | 65..412 | 1..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:02 Download gff for
UFO05266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13323-RA | 33..380 | 1..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:03 Download gff for
UFO05266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13323-RA | 33..380 | 1..349 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:03 Download gff for
UFO05266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13046881..13047224 | 1..344 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:02 Download gff for
UFO05266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8934386..8934729 | 1..344 | 99 | | Minus |
