UFO05268.5prime Sequence
1109 bp (999 high quality bases) assembled on 2009-07-06
> UFO05268.5prime
CAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGGTCGAAAGG
GACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGACCGCTTCAC
TGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGTGCCGGAGC
CGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAGGCGGCTTC
CAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTACAACGGACA
TCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGGAGCTGGCT
ACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCAACAACAGA
TACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGAGGGTCCGG
AGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAGAAATGATA
CTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATGGAAACTTT
GTGCCTGCATCCAAGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTG
AAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCAAACTGGTG
AACTCACCCAGGATTGGCTGGAGAACGAAAAACATATCTCATAAACCTTT
AGAAGATAAGCCAGGTTCACCCGTAACCACGCCACATCTTGCGAATATAT
GTGTAGAACCTGACGAATCGTCTGATCACTCACGATGAACGTCAGTTGTC
TAGGACGGT
UFO05268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13807-RA | 636 | CG13807-RA | 55..564 | 9..518 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2262973..2263294 | 9..330 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 2263355..2263543 | 330..518 | 945 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 276..322 | 111 | 72.9 | Plus |
UFO05268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:52 Download gff for
UFO05268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13807-RA | 1..513 | 9..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:27 Download gff for
UFO05268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13807-RA | 55..569 | 9..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:00 Download gff for
UFO05268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13807-RA | 55..569 | 9..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:00 Download gff for
UFO05268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2262973..2263294 | 9..330 | 100 | -> | Plus |
| 3L | 2263356..2263550 | 331..526 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:27 Download gff for
UFO05268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2262973..2263294 | 9..330 | 100 | -> | Plus |
| arm_3L | 2263356..2263550 | 331..526 | 97 | <- | Plus |
