UFO05272.5prime Sequence
1089 bp (990 high quality bases) assembled on 2010-12-10
> UFO05272.5prime
CAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCTTCCTGGTG
CTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAGCTGCTCAC
GCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCCCCGCAGTT
ATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGACGCAGTACA
TCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGTCTGTTTCA
GATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGGAATCTGCA
ACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATGACTCGCGA
TGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGGCCCGGATG
GATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCGTTGCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAACATATCTCATAAACCCTTAGGAAATAGCCAGGTTTCA
CCGTACACCGCCACATCTGCGAATATATGGTGTAGAACTGCGGAATCGTC
TGGTATCACTCCAGACGATGAAAACGTTTCAGTGCTCATGGAACGGTTAA
CAAGCGCGTGAACTTCCATATCACAGCTAACTGCTCATG
UFO05272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11159-RA | 656 | CG11159-RA | 117..555 | 8..446 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20656338..20656493 | 163..8 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 20655857..20655989 | 446..314 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 20656183..20656271 | 251..163 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 20656067..20656133 | 315..249 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:17:52 has no hits.
UFO05272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:19 Download gff for
UFO05272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11159-RA | 109..563 | 1..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:20 Download gff for
UFO05272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11159-RA | 109..563 | 1..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:21 Download gff for
UFO05272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11159-RA | 109..563 | 1..454 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:21 Download gff for
UFO05272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20655857..20655987 | 316..446 | 100 | <- | Minus |
| 2R | 20656067..20656130 | 252..315 | 100 | <- | Minus |
| 2R | 20656183..20656271 | 163..251 | 100 | <- | Minus |
| 2R | 20656339..20656496 | 1..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:20 Download gff for
UFO05272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16543688..16543776 | 163..251 | 100 | <- | Minus |
| arm_2R | 16543362..16543492 | 316..446 | 100 | <- | Minus |
| arm_2R | 16543572..16543635 | 252..315 | 100 | <- | Minus |
| arm_2R | 16543844..16544001 | 1..162 | 97 | | Minus |
