UFO05273.5prime Sequence
1114 bp (1009 high quality bases) assembled on 2009-07-06
> UFO05273.5prime
CAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTCGCACACTT
TTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTACTCGATTTG
GACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGTGCTCCAAT
CCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTTGGCTGGTG
GTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAACTGATGAA
AGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCAACGGCACT
TCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTTTGAGCTTG
GCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATCGTAACGAT
CTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCATCGTCCTAA
CGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCCGTTTGCCG
CTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATCTTCGTCGC
GATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGGCGAGCACG
TCGAGCACTCGCTGCGTATCATTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAGCCATCACAAACGGCATGATGACCTGATC
GCAGCGGCATCAGCACTTGTCGCTTGCGTATAATATTTGCCATGTGAAAC
CGGGGGGCGAAGAAGTGTCCATATGTCACGTTTAAATCAAACTGGGTGAA
CTCACCAAGAATGCTGAAAGAAAAACATTCTCAATACTAGAAAGCAGCTT
CACGGTAACGCACC
UFO05273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12535-RE | 1643 | CG12535-RE | 848..1462 | 9..623 | 3060 | 99.8 | Plus |
| CG12535-RD | 1603 | CG12535-RD | 719..1333 | 9..623 | 3060 | 99.8 | Plus |
| CG12535-RC | 1824 | CG12535-RC | 1029..1643 | 9..623 | 3060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3393025..3393414 | 398..9 | 1935 | 99.7 | Minus |
| X | 23542271 | X | 3392667..3392892 | 623..398 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:20 has no hits.
UFO05273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:54 Download gff for
UFO05273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12535-RB | 1..615 | 9..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:37 Download gff for
UFO05273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12535-RC | 1022..1643 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:51 Download gff for
UFO05273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12535-RC | 1022..1643 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:51 Download gff for
UFO05273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3393025..3393421 | 1..398 | 98 | | Minus |
| X | 3392667..3392891 | 399..623 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:37 Download gff for
UFO05273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3287058..3287454 | 1..398 | 98 | | Minus |
| arm_X | 3286700..3286924 | 399..623 | 100 | <- | Minus |
