UFO05281.5prime Sequence
1070 bp (972 high quality bases) assembled on 2010-12-10
> UFO05281.5prime
CAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAATCGGACAAA
TCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGTCATCTGTA
CAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTTCCACCAGT
ACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAACTGATTAC
CGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTGGCTGCCGG
CAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCGCCTGCGCG
CCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCACCGCTGGAT
TGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAGAATACCTA
TCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCCGCAAGGAG
AGGAACGCTCGCTGTGCACGATCATGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAGAGTTGTCCATATTGGCCACGTTTAATCA
AACTGTGAACTCACCCAGGATGCTGAGACGAAAAACATATCTCATAACCC
TTTAGAAATAGCCAGTTTCACGTACCGCCAATCTGCGAATATATGTGTAG
ACTGCGAAATCGTCTGAATTCCACTCGAGCGATGAAACGTCAGTTGCTCA
TGGAACCGGTACAGTACATC
UFO05281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15908-RA | 537 | CG15908-RA | 36..503 | 9..476 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6668309..6668704 | 81..476 | 1980 | 100 | Plus |
| 2R | 25286936 | 2R | 6668185..6668256 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:20:38 has no hits.
UFO05281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:49 Download gff for
UFO05281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9410-RD | 28..508 | 1..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:15 Download gff for
UFO05281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15908-RA | 28..508 | 1..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:57 Download gff for
UFO05281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15908-RA | 28..508 | 1..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:57 Download gff for
UFO05281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6668177..6668256 | 1..80 | 95 | -> | Plus |
| 2R | 6668309..6668704 | 81..476 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:15 Download gff for
UFO05281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2555682..2555761 | 1..80 | 95 | -> | Plus |
| arm_2R | 2555814..2556209 | 81..476 | 100 | == | Plus |
