UFO05289.5prime Sequence
1133 bp (1008 high quality bases) assembled on 2009-07-06
> UFO05289.5prime
CAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTATTCGTTGCG
TTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGTCCAAAGGA
GTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGATCCAAGATG
ACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGACGGTGAAC
GACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGATCTTCCAGA
GGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAGTTTCTTCC
TCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATTTCCGAGTG
CCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTA
ACACGCCACATCTGCGAATATATGTGTAGAACTGCCGGGAATCGTCGTGG
TATCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGT
ACAGGGTGACACTATCCCATATCACAGCTCACGTCTTTCATGCATACGAA
ATCGGAGTGACATCATCAGGCGGGCAGATGTGAATAAGCGATAACTTGGT
CTATTTCGTACGCTGAAGCGTATATCAGCGAAC
UFO05289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14974-RA | 491 | CG14974-RA | 68..445 | 9..386 | 1890 | 100 | Plus |
| CG14974-RC | 488 | CG14974-RC | 68..442 | 9..386 | 1835 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3620479..3620691 | 386..174 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 3620872..3620965 | 102..9 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 3620742..3620812 | 173..103 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:59 has no hits.
UFO05289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:00 Download gff for
UFO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14974-RA | 53..430 | 9..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:44 Download gff for
UFO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14974-RA | 68..445 | 9..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:33 Download gff for
UFO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14974-RA | 68..445 | 9..386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:33 Download gff for
UFO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3620479..3620691 | 174..386 | 100 | <- | Minus |
| 3L | 3620742..3620812 | 103..173 | 100 | <- | Minus |
| 3L | 3620872..3620965 | 9..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:44 Download gff for
UFO05289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3620479..3620691 | 174..386 | 100 | <- | Minus |
| arm_3L | 3620742..3620812 | 103..173 | 100 | <- | Minus |
| arm_3L | 3620872..3620965 | 9..102 | 100 | | Minus |
