UFO05292.5prime Sequence
1065 bp (984 high quality bases) assembled on 2010-12-10
> UFO05292.5prime
CAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCATACGCCTTC
TTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACGACCTTGGG
AGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAAGATGGCGG
TCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCGTAATGGCG
GGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATAGCCGGATC
GATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCTGGGCGCCG
GATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCATTGGAATC
GCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGCCTTTTCGT
GGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCTATACGGCC
TCATTGTGGCCATCTATTTGTACACTAAGCTTGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATA
TTTGCCCATGGTGAAACGGGGGCGAGAGTTGTCCATATTGCCACGTTTAA
ATCAAACTGGTGAAACTCACCCAGGATGGCTGAACGAAAACATATCTCAT
AACCCTTAGGAAATAGCAAGTTTCACGTACACGCCACATCTGCGATATAT
GTGTAGAACTGCGAATCGTCTGTTATCACTCCGAGGATGAACGGTCAGTT
GGTCATGACGGTTAC
UFO05292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-2-RA | 595 | CG32089-RA | 41..514 | 9..482 | 2370 | 100 | Plus |
| Vha16-3-RB | 633 | CG32090-RB | 219..542 | 156..479 | 380 | 75.6 | Plus |
| Vha16-3-RA | 587 | CG32090-RA | 173..496 | 156..479 | 380 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11474998..11475471 | 9..482 | 2370 | 100 | Plus |
| 3L | 28110227 | 3L | 11473558..11473881 | 156..479 | 375 | 74.4 | Plus |
| 2L | 23513712 | 2L | 10736638..10736774 | 235..99 | 220 | 77.4 | Minus |
| 2R | 25286936 | 2R | 6627477..6627556 | 475..396 | 205 | 83.8 | Minus |
| 2L | 23513712 | 2L | 10736392..10736483 | 475..384 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:18:07 has no hits.
UFO05292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:22 Download gff for
UFO05292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-2-RA | 34..521 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:32 Download gff for
UFO05292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-2-RA | 34..521 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:30 Download gff for
UFO05292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-2-RA | 34..521 | 1..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:30 Download gff for
UFO05292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11474991..11475471 | 1..482 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:32 Download gff for
UFO05292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11468091..11468571 | 1..482 | 99 | == | Plus |
