UFO05306.5prime Sequence
1015 bp (885 high quality bases) assembled on 2010-04-05
> UFO05306.5prime
CAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTGGCGTCCTG
CAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTTAGGGAATT
GATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGAGAAATATA
AACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGAGCGATGTA
AAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATGCAGGGCGT
CTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGTGGCGGCCT
GCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGCACGAGGAG
TCGCTCATTGGCAGCCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTG
GTGAACTCACCCAGGGATTGGCTGAGACGAAAACATATCTCAATAAACCC
TTTAGGAATAGGCAGTTTCACGTACACGCCACATCTGCGAATATATGTGT
AGAACTGCGAAATCGTCTGTATCACTCCAGAGCGATGAAACGTTCAGTTG
CTCATGAAACGGTGTAACAGGGTGAACACTATCCATATCACCAGCTCACC
GTCTTTCTTGCTCGA
UFO05306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pallidin-RB | 952 | CG14133-RB | 207..567 | 8..368 | 1805 | 100 | Plus |
| Sug-RF | 3349 | CG7334-RF | 3210..3308 | 368..270 | 480 | 99 | Minus |
| Sug-RE | 3343 | CG7334-RE | 3204..3302 | 368..270 | 480 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11690016..11690114 | 368..270 | 480 | 99 | Minus |
| 3L | 28110227 | 3L | 11691040..11691135 | 103..8 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 11690226..11690313 | 275..188 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 11690897..11690981 | 188..104 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:54:55 has no hits.
UFO05306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:06 Download gff for
UFO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14133-RB | 201..567 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:33 Download gff for
UFO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pallidin-RB | 201..567 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:40 Download gff for
UFO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pallidin-RB | 201..567 | 1..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:40 Download gff for
UFO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11690016..11690108 | 276..368 | 100 | <- | Minus |
| 3L | 11690226..11690312 | 189..275 | 100 | <- | Minus |
| 3L | 11690897..11690981 | 104..188 | 100 | <- | Minus |
| 3L | 11691040..11691138 | 1..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:33 Download gff for
UFO05306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11683326..11683412 | 189..275 | 100 | <- | Minus |
| arm_3L | 11683997..11684081 | 104..188 | 100 | <- | Minus |
| arm_3L | 11684140..11684238 | 1..103 | 96 | | Minus |
| arm_3L | 11683116..11683208 | 276..368 | 100 | <- | Minus |
