UFO05308.5prime Sequence
918 bp (753 high quality bases) assembled on 2010-04-05
> UFO05308.5prime
CAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACGTTGTGGCT
CTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACAAATGGAGT
GGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCGCCATGTCC
CCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTCCACCTCCG
AAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTGGCCAATGA
TGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGCTCCACCTG
GAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGTTCCTTCTC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCTTGCGTATAATATTTGCCCATGTGAAACGGGGCGAAGAGTTGTC
CATATTGGCCACGTTAATCAAACTGTGAACTCACCCAGGATTGCTGAACG
AAAACAATCTCAATAAGCCTTAGGGAATAGCAGTTCACCGTACCACGCCC
ATCTGCAATATATTGTGGAGAACTGCGAAATCGTCTGTATTCACTCCGAG
GCGATGAAACGTTCAGTT
UFO05308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13428-RA | 482 | CG13428-RA | 48..389 | 9..350 | 1710 | 100 | Plus |
| CG13428-RB | 407 | CG13428-RB | 174..314 | 210..350 | 705 | 100 | Plus |
| CG13428-RB | 407 | CG13428-RB | 48..173 | 9..134 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20540305..20540401 | 105..9 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 20539965..20540040 | 209..134 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 20539605..20539676 | 350..279 | 360 | 100 | Minus |
| 2R | 25286936 | 2R | 20539745..20539813 | 278..210 | 345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2465..2517 | 751..700 | 109 | 69.8 | Minus |
UFO05308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:08 Download gff for
UFO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13428-RA | 38..394 | 1..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:56 Download gff for
UFO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13428-RA | 38..394 | 1..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:29 Download gff for
UFO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13428-RA | 38..394 | 1..355 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:29 Download gff for
UFO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20539605..20539676 | 279..350 | 100 | <- | Minus |
| 2R | 20539745..20539813 | 210..278 | 100 | <- | Minus |
| 2R | 20539965..20540039 | 135..209 | 100 | <- | Minus |
| 2R | 20540221..20540250 | 105..134 | 100 | <- | Minus |
| 2R | 20540306..20540411 | 1..104 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:56 Download gff for
UFO05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16427110..16427181 | 279..350 | 100 | <- | Minus |
| arm_2R | 16427250..16427318 | 210..278 | 100 | <- | Minus |
| arm_2R | 16427470..16427544 | 135..209 | 100 | <- | Minus |
| arm_2R | 16427726..16427755 | 105..134 | 100 | <- | Minus |
| arm_2R | 16427811..16427916 | 1..104 | 97 | | Minus |
