UFO05316.5prime Sequence
1106 bp (940 high quality bases) assembled on 2010-04-05
> UFO05316.5prime
CAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTGGTCTGCGG
AGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTCGATACGAT
TAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGATCGCATAC
AGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAAGCTGTTTA
GCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGCCCAATCTG
TCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTTCCACGATA
ACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGCTCAGTCTG
GGCCCCTTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGCCACGTTT
AAATCAAACTGGTGAAACTCACCCAGGGATGGCTGAGACGAAAACATATT
TCTCATAACCCTTTAGGGAATAGGCAGTTTCACCGTACACGCCACATCTT
GCGAATATATGTGTAGAACTGCCGGAATCGTCGTGTATTCACTCCAGAGC
GATGAAACGTTCAGTTGCTCATGGAAACGGTGTAACAGGGTGACACCTAT
CCATATACCAGCTCACGTCTTTCTTGCTACGAATTCCGATGAAATCTCAG
CGGCAAAATGTGGATAAAGGCGGATAACTGTGCCTATTTTCTTTACGCCT
TAAAGC
UFO05316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17048-RB | 712 | CG17048-RB | 167..538 | 9..380 | 1860 | 100 | Plus |
| CG17048-RA | 592 | CG17048-RA | 167..538 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13354043..13354333 | 299..9 | 1455 | 100 | Minus |
| 2R | 25286936 | 2R | 13353812..13353892 | 380..300 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:46 has no hits.
UFO05316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:14 Download gff for
UFO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 1..375 | 9..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:54 Download gff for
UFO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 185..566 | 1..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:05 Download gff for
UFO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 163..544 | 1..388 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:05 Download gff for
UFO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13353812..13353892 | 300..380 | 100 | <- | Minus |
| 2R | 13354043..13354337 | 1..299 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:54 Download gff for
UFO05316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9241317..9241397 | 300..380 | 100 | <- | Minus |
| arm_2R | 9241548..9241842 | 1..299 | 98 | | Minus |
