UFO05322.5prime Sequence
1084 bp (964 high quality bases) assembled on 2010-04-05
> UFO05322.5prime
CAGTCGACATGGCGTTTAATAGCCGGGTTTTGGTGCCTGTCCTCAAGGCC
GATGATGACGAAAAGGAGTTAGTTGATCCGCAAGCAGCCCTTAGGGAGAA
GTGCCAGGCCAAAGGTCACATTGCGTCCCTGTACAACAAGTATCAAGAGT
GCAATGATCGTGTGAATGGCAAGTCCAAAACCACTGAGACATGCATGGAG
GAATTGTTCGACTTCGTCGCTGAATTGGATCATTGCGTTGCTCACAGTCT
CTTCTCGAAACTCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGA
TGAAAACGTTTCAGTTTGCTCATGAAAACGGTGTAACAGGGTGACACTAT
TCCCATATCACCAGCTTCACCGTCTTTCATTGCATACGAAATTCCGATGA
GCATCATCAGCGGCAAGAATGGTGAATAAGCCGATAAACTTGTGCTATTT
TCCTTACGGCCTTAAAGCGTAAATTCACTGAACGGTTTGTTTAGGTACAT
GAACACTGACTGAATGCCTCAAGTTCTTTCATGC
UFO05322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30354-RB | 443 | CG30354-RB | 117..374 | 9..266 | 1290 | 100 | Plus |
| CG30354-RA | 387 | CG30354-RA | 61..318 | 9..266 | 1290 | 100 | Plus |
| Ucrh-RD | 506 | CG41623-RD | 136..333 | 53..250 | 435 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8677335..8677592 | 9..266 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 25121043..25121198 | 95..250 | 345 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:08 has no hits.
UFO05322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:11 Download gff for
UFO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30354-RA | 4..273 | 1..276 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:50 Download gff for
UFO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30354-RA | 56..325 | 1..276 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:39 Download gff for
UFO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30354-RA | 56..325 | 1..276 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:39 Download gff for
UFO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8677330..8677592 | 1..266 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:50 Download gff for
UFO05322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4564835..4565097 | 1..266 | 98 | == | Plus |
