UFO05334.5prime Sequence
1101 bp (984 high quality bases) assembled on 2010-04-05
> UFO05334.5prime
CAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGCGCGATTGT
GGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCACACGCGTCT
GATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAAATTCGGAA
GTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAACTGAGGCGA
TCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGGAGTTGCGA
GAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGAACCCATCA
ACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCATCGAATTTC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCATAAACCCTTTAGGGAAATAGGC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGGTTTCGGTT
TGCTCATGGAAACGGTGTTAACAAGGGTGAACACTATTCCCATATCACCG
CTCACGTCTTTCATTGCTACGAATTCCGGATGGACATCTCAGCGGGCAAG
ATTGATAAGCGATAAACTTGGCTTATTTTTCTTTAAGGTCTTTAAAGCCG
A
UFO05334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18577-RA | 810 | CG18577-RA | 15..356 | 9..350 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11196106..11196366 | 9..269 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 11196749..11196831 | 268..350 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:39 has no hits.
UFO05334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:20 Download gff for
UFO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18577-RA | 1..344 | 7..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:41 Download gff for
UFO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18577-RA | 5..356 | 1..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:22 Download gff for
UFO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18577-RA | 5..356 | 1..350 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:22 Download gff for
UFO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11196096..11196365 | 1..268 | 98 | -> | Plus |
| 3R | 11196750..11196836 | 269..356 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:41 Download gff for
UFO05334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7021818..7022087 | 1..268 | 98 | -> | Plus |
| arm_3R | 7022472..7022558 | 269..356 | 95 | -> | Plus |
