UFO05341.5prime Sequence
1090 bp (972 high quality bases) assembled on 2009-07-06
> UFO05341.5prime
CAGTCGACATGGAAGTTAAGGTGTTGGTTCTGATCTCCCTAGGATTATTA
CTATCGCTGGCTGAGGCTCAGCAGGAGCATCCGGCGACATCTGTGAAGAA
ATGTTCCGGAAGTAAACCTTTTCCGCTTGAGGTGCGTGTGCACAATTGCG
TTACTCCACCCTGTCAGATTGTGAAGGGAACGACACAGAAGTTCGAGATC
GATTTCGCCGTGGACAAGTACATCACCCAGCTGACGACCTTGGTAAAGGC
CACCACACTCGGAATCATTACGGTGCCATATGAACTGCCTGCGGATGTGG
CTGCCGTGTGCCCGAATCTCCAGTACGGCGCCTATTGCCCGCTGTATCCC
ACCGAGGATGTCTCCTATTTGTTCACCTTTCCCATTGGTGAATATCCCGA
GATTGGCGTGAAGATCGAGATCTATCTGGTCGATCAGGACAATGAGATTG
CCACGTGCTTCGTGTGCGATATTAAGGTGGTCAAGGGCAACGGCGGCAAT
ACGGTCTATGAGCTGGACTATCTCAACGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAGACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGC
CCATGTGAAAACGGGGCGAAGAGTTGTCATATTGGCCACGTTTAATTCAA
ACTGGTGAACCTCACCAGGATTGCTGAAACAAAAACATATTCTCATAAGC
CTTTAGGGAAATAGGCAGGTTCACGTAAACGCCAATCTTGCAATATGTGT
AAAACTGCCGAATGTCTGTTCTCTCCGACGTAGCAAACGT
UFO05341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..523 | 7..527 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055494..10055918 | 527..103 | 2125 | 100 | Minus |
| 3R | 32079331 | 3R | 10055984..10056081 | 104..7 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:01 has no hits.
UFO05341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:39 Download gff for
UFO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 3..530 | 7..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:26 Download gff for
UFO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 7..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:44 Download gff for
UFO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 7..535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:44 Download gff for
UFO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055986..10056085 | 1..102 | 96 | | Minus |
| 3R | 10055483..10055918 | 103..541 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:26 Download gff for
UFO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881708..5881807 | 1..102 | 96 | | Minus |
| arm_3R | 5881205..5881640 | 103..541 | 98 | <- | Minus |
