UFO05346.5prime Sequence
965 bp (936 high quality bases) assembled on 2010-04-05
> UFO05346.5prime
CAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGTACGCTCTG
CCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCCAGGGTGGA
TGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGAAAAGGACT
ATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGGAGCGCGGC
GACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAGATTATCAA
GCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGGCTACAAGC
ACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGGGCGATCAC
ACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCCCTGGGCCT
GATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACGCTGGCGAA
TACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGGCCTCCAAG
AACTCCAGCAACTACTACAACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTA
GCATTCTGCCGACATGAAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGTG
AAACGGGGCGAAAAGTTGTCATATTGGCCACGTTTAAATCAAACCTGGGT
GAACTCACCCGGGGA
UFO05346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11110-RA | 752 | CG11110-RA | 95..608 | 8..521 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641995..20642414 | 102..521 | 2100 | 100 | Plus |
| 2R | 25286936 | 2R | 20641836..20641931 | 8..103 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:18 has no hits.
UFO05346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:35 Download gff for
UFO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11110-RA | 31..551 | 1..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:57 Download gff for
UFO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11110-RA | 91..608 | 1..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:45 Download gff for
UFO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11110-RA | 91..608 | 1..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:45 Download gff for
UFO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641996..20642414 | 103..521 | 100 | == | Plus |
| 2R | 20641832..20641930 | 1..102 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:57 Download gff for
UFO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16529337..16529435 | 1..102 | 97 | -> | Plus |
| arm_2R | 16529501..16529919 | 103..521 | 100 | == | Plus |
