UFO05347.5prime Sequence
1065 bp (957 high quality bases) assembled on 2010-04-05
> UFO05347.5prime
CAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGTATCCCTCA
GTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCACTAAGTCG
TAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTCAGGAGGAG
GCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATTCAGGACTA
CTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATGTTCGGGAA
TAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAGCACCTTTC
AGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGATGATGGAC
AAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAGGACGGTCG
TATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTTCTCAAATC
TATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAATGAAGGAA
ATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTCTGCAAAGC
ATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGATACCCGAAT
ACCATGGTCGAACCACAGATGATTTGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGAAATCAAATTACGCCCGCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCCCAAACGGCATGATGAACCT
GATCCGCCAGGGGCATCAGCACCTTGGCGCCTTGGCGTTATAATATTGGC
ATGGTGGAACCGGGGGCGAAAAAGTTGCCTATTGGCACGGTTAATACAAA
CTTGGGTGAACTCTC
UFO05347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14362-RA | 688 | CG14362-RA | 6..623 | 9..626 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13855039..13855308 | 363..94 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 13854664..13854926 | 626..364 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 13855365..13855449 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:58 has no hits.
UFO05347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:36 Download gff for
UFO05347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14362-RA | 1..621 | 9..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:39 Download gff for
UFO05347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14362-RA | 1..626 | 7..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:23 Download gff for
UFO05347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14362-RA | 1..626 | 7..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:23 Download gff for
UFO05347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13854661..13854926 | 364..630 | 99 | <- | Minus |
| 3R | 13855039..13855308 | 94..363 | 100 | <- | Minus |
| 3R | 13855365..13855453 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:39 Download gff for
UFO05347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9680383..9680648 | 364..630 | 99 | <- | Minus |
| arm_3R | 9680761..9681030 | 94..363 | 100 | <- | Minus |
| arm_3R | 9681087..9681175 | 1..93 | 95 | | Minus |
