UFO05352.5prime Sequence
1009 bp (910 high quality bases) assembled on 2010-04-05
> UFO05352.5prime
CAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTTCGGGTTGG
ATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGACTCTCCTCC
ACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGTGGACTACG
AGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTCCAAACGAG
CCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGCAAGCGCGG
AATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAAGCATCTCC
AGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGATCAACGGG
GTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTGAAGCCCAC
GCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGAGCACGTCA
AGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGAATATTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGCAT
CACAAACGCATGATGACCTGATCGCCAGCGGCATCAGCACTTGTCGCTTG
CGTATATATTTGCCCATGTTGAACGGGGCGAGAGTGTCCATATGCACGTT
AAATCAACTGGTGAACTCACCCAGAATGCTGAAACGAAAAACAATTTCAT
AACCTTAGAATGCCAGGTTTCACGTACGCCACATCTTGCATTATTGTGTA
GAACTGGCG
UFO05352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14757-RA | 739 | CG14757-RA | 117..605 | 9..497 | 2445 | 100 | Plus |
| CG12895-RB | 667 | CG12895-RB | 160..410 | 138..388 | 565 | 82.1 | Plus |
| CG12895-RA | 593 | CG12895-RA | 160..410 | 138..388 | 565 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8172498..8172772 | 497..223 | 1375 | 100 | Minus |
| 2R | 25286936 | 2R | 8173172..8173370 | 224..26 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 10436855..10436997 | 388..246 | 415 | 86 | Minus |
Blast to na_te.dros performed 2014-11-28 19:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2226..2298 | 105..33 | 112 | 64.9 | Minus |
UFO05352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:50 Download gff for
UFO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14757-RA | 113..610 | 1..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:05 Download gff for
UFO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14757-RA | 113..610 | 1..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:01 Download gff for
UFO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14757-RA | 113..610 | 1..503 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:01 Download gff for
UFO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8172498..8172771 | 224..497 | 100 | <- | Minus |
| 2R | 8173173..8173369 | 27..223 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:05 Download gff for
UFO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4060003..4060276 | 224..497 | 100 | <- | Minus |
| arm_2R | 4060678..4060874 | 27..223 | 100 | <- | Minus |
