UFO05353.3prime Sequence
1103 bp (-999 high quality bases) assembled on 2010-04-05
> UFO05353.3prime
AACTGAACGTTTATTCTGAGTGATACAGACGATTTCCGCCAGTTCACAAA
TAATTGGCAGATTGGGCGTGTTACGGTGAAAGCTGCTATTCCTAAAGGGT
TAATGAGAATATGTTTTTCGTTTCAGGCAATCCCTGGGTGAGTTCACCAG
TTTGATTAACGTGGCAATATGGACAACTTCTTCGCCCCCGTTTCACCATG
GGCAAATATATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATCAGG
TTCATCATGCCGTTTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAA
TTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAATTTGATATCGA
GCTCGCTTGGACTCCTGTTGATAGATCCAGTAATGACCTCAGAACTCCAT
CTGGATTTGTTCAGAACGCTCGGTTGCCGCCGGGCGTTTTTTATTGGTGA
GAATCCAAGCACTAGTCATGACCAGGATCTCCTAGGCTAGTTGTGATTAT
GATTATGATTATGATTATGATTATGACCACTTACCTGGGCCCGCGCGCCA
AACGAATGGTCTAGAAAGCTTGCGGGCTCCATTCCACCAGATTCGGCATC
GATCTTGTGATCGGTATAGATGGGTTGCAATATCTCACGGGCAGCTTCGT
GATCAGCTTTTCCCAGGGCCTGTGATCTTCCATACAGCTTGATGTACTTC
TTTTCCTTGTCGTGAACCAAGTAACCACCTCCAAGACCCTGGGTGCACAA
GCCCATCGACTCAGCCTCCTTTTTCAACTCATCGTATACATCAAGATGGT
ACTTGGCCTTGGAAAGGCTACGAATCACCTGCTTGGCGCTACCCATTTCC
CCATGGATATAAACGTGGGCCATCATGTACTTTGATTTTCCACTTTCCAC
CTTGGCAACAGGAAAAGCGACTAGACTTCGCATTGGCTTCTCACAATAAA
GTCGAGCCGCTTGCATCATTGGCCGCCAAACGGGTTTAAGAAATTTTCCA
GCAAACTCCATGTCAAAAAAAAAAAATATTTTTGCTTTTTTTCTTTTTAT
TTGTGTACTAGCTGTCGAACTGATCCCGAAGTACCAAAGTGCCATGTCGA
CTG
UFO05353.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18662-RA | 646 | CG18662-RA | 18..511 | 1068..574 | 2450 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8981077..8981297 | 794..574 | 1105 | 100 | Minus |
| 2L | 23513712 | 2L | 8980853..8981023 | 961..791 | 840 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8980676..8980783 | 1068..960 | 495 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:34 has no hits.
UFO05353.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:53 Download gff for
UFO05353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18662-RA | 1..490 | 574..1064 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:01 Download gff for
UFO05353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18662-RA | 9..511 | 574..1079 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:33 Download gff for
UFO05353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18662-RA | 9..511 | 574..1079 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:33 Download gff for
UFO05353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8980667..8980783 | 960..1079 | 95 | -> | Minus |
| 2L | 8980855..8981019 | 795..959 | 100 | -> | Minus |
| 2L | 8981077..8981297 | 574..794 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:01 Download gff for
UFO05353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8980667..8980783 | 960..1079 | 95 | -> | Minus |
| arm_2L | 8980855..8981019 | 795..959 | 100 | -> | Minus |
| arm_2L | 8981077..8981297 | 574..794 | 100 | == | Minus |
