UFO05354.5prime Sequence
1142 bp (996 high quality bases) assembled on 2010-04-05
> UFO05354.5prime
CAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCATCGAGTGC
AACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAGGCTCACAA
TCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGACGAAGAAC
TCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGAATGAAGGT
GTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGACCCAATATC
AGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTTGCCTAGGG
AATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGAACACAAAG
TATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGACTTGGCGT
TGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAGATATGCTC
CTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCAAGCGACCG
ACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTTGAGTTCGC
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAATCAACTGGTGAACTCACCCAGGGATTGGCTG
AAACGAAAACTTTTCTCCATAACCCTTAGGGAAATAGGCCAGGTTTCACC
GTACCCGCCCAATCTTTGCAATATTGTGTGAGACTGCGCGGAAATTGGTC
TGTGTATTACCTCCGAGCAGTGAAACGGTTCGATTGTCTCAT
UFO05354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32313-RA | 732 | CG32313-RA | 50..592 | 9..551 | 2715 | 100 | Plus |
| CG32313-RB | 735 | CG32313-RB | 50..595 | 9..551 | 2675 | 99.5 | Plus |
| CG32313-RC | 752 | CG32313-RC | 50..612 | 9..551 | 2495 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1545170..1545405 | 415..180 | 1180 | 100 | Minus |
| 3L | 28110227 | 3L | 1544968..1545103 | 551..416 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 1545473..1545607 | 180..46 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 1545656..1545694 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:57:19 has no hits.
UFO05354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:55 Download gff for
UFO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32313-RA | 44..599 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:37 Download gff for
UFO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32313-RA | 44..599 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:45 Download gff for
UFO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32313-RA | 44..599 | 1..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:45 Download gff for
UFO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1544968..1545103 | 416..551 | 100 | <- | Minus |
| 3L | 1545170..1545405 | 180..415 | 100 | <- | Minus |
| 3L | 1545474..1545605 | 48..179 | 100 | <- | Minus |
| 3L | 1545656..1545698 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:37 Download gff for
UFO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1544968..1545103 | 416..551 | 100 | <- | Minus |
| arm_3L | 1545170..1545405 | 180..415 | 100 | <- | Minus |
| arm_3L | 1545474..1545605 | 48..179 | 100 | <- | Minus |
| arm_3L | 1545656..1545698 | 1..47 | 91 | | Minus |
