UFO05357.5prime Sequence
1057 bp (949 high quality bases) assembled on 2010-04-05
> UFO05357.5prime
CAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTACCGCTAACT
GCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAATCTCTGCAT
GAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAACAATCTGT
TCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCAGGATCAAC
ATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCGGTAGCCGC
TCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCTGGCGGATA
GACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCAATACCGAC
AAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATGGGACGGAC
CAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGAGTTGTTTC
TGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGCCAGTAAGA
GAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGACCATGGTTC
TCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAAGGAGTCAA
ATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACAACCTGGTT
CCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACTGGACCGAG
CCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGATGCCAACA
GCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAATACAAGTGGACA
TTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATATCATAATCATAATCACAACTAGCCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCCACCAATAAAAAACGCCCGGCGG
CACCGGGCGTTTCTGACAAATCCGGATGGAGTTCTTGAGTACATTACTGG
ATCTATCACAGAGGTCCAAGCGACTCGCGATATCAAATAAGCGCCCCGCC
TGGCGAC
UFO05357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| antr-RA | 896 | CG30488-RA | 4..802 | 5..802 | 3955 | 99.7 | Plus |
| antr-RB | 917 | CG30488-RB | 4..823 | 5..802 | 3735 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12847428..12847816 | 505..117 | 1945 | 100 | Minus |
| 2R | 25286936 | 2R | 12846942..12847240 | 802..505 | 1445 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12847889..12848001 | 117..5 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:17:51 has no hits.
UFO05357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:00 Download gff for
UFO05357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30488-RA | 16..816 | 1..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:21 Download gff for
UFO05357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30488-RA | 2..802 | 1..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:09 Download gff for
UFO05357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| antr-RA | 2..802 | 1..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:09 Download gff for
UFO05357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12846942..12847239 | 506..802 | 99 | <- | Minus |
| 2R | 12847428..12847816 | 117..505 | 100 | <- | Minus |
| 2R | 12847890..12848003 | 1..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:21 Download gff for
UFO05357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8734447..8734744 | 506..802 | 99 | <- | Minus |
| arm_2R | 8734933..8735321 | 117..505 | 100 | <- | Minus |
| arm_2R | 8735395..8735508 | 1..116 | 97 | | Minus |
