UFO05360.5prime Sequence
1043 bp (940 high quality bases) assembled on 2010-04-05
> UFO05360.5prime
CAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGAATCCCTCG
ATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCAGAAAAGGT
AGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGAAGAGCCAC
CGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAATCGGATTAC
AAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCCACGTTTGC
TGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGAGCCCGAGG
TGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAATACGTAGT
ACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTGTCAGATCA
ATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCAAACGGATC
CGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCTACGGACTA
GATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGGCCTCTAAC
CCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGAGATGGGAA
TGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGGCTCCGTGT
TGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTGGGCAGTCT
TGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAACGGATCCAC
CGCCAACTACTGATTTGACTGAGATCCGGAAACGGATCGAGATGATAATC
AGTATAGAGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATATCATATCATATCATATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCATAAAAACGCCGGCGCACG
AGCGTTCTGAACAATTCAGATGGAGTTCTGAGGTCATACTGGATCTTCAA
GGAGTCAAGCGAGCCGGATATCAATACGCCCCGCCTGCCACTC
UFO05360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6576-RA | 1179 | CG6576-RA | 195..995 | 9..808 | 3980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8756183..8756983 | 9..808 | 3955 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 21:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 737..678 | 111 | 65 | Minus |
UFO05360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:17:46 Download gff for
UFO05360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6576-RA | 195..995 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:04:17 Download gff for
UFO05360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6576-RA | 195..995 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:09 Download gff for
UFO05360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6576-RA | 195..995 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:09 Download gff for
UFO05360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8756183..8756996 | 9..821 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:04:17 Download gff for
UFO05360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8749283..8750096 | 9..821 | 99 | <- | Plus |
