UFO05364.5prime Sequence
1100 bp (990 high quality bases) assembled on 2010-04-05
> UFO05364.5prime
CAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCCAGGAGACA
AAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAATCTGCAACT
TAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTCGGTGAAAC
CTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCGGAAAACTG
AGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTGTGCAAAAA
GGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCATTAACGTGA
ATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCAAAGCCACG
ACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCTCTAAGCGA
GGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTCACTGCAGA
AGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCCTTATAACT
GGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATTACTGGCAG
CATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGAGATGCAAT
TGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCAAGGATGCC
ACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTGCCGAAGCT
AGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTGCCCTACGT
TGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGATTGTTGTA
TTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTCCTTAACGT
TCGACAGGTCCTCTTCCCAGCAAAGTAACAACTGCAAGACGCGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCTAA
TCTAATCATAATATAATCCCACTAGGCTAGGAGAATCTTGTCATTGAATA
AGTGCTTGATTCTCTACAATAAAAACGCCCGGCGGCAACCGACGGTCTGA
ACATTCCGAAGGAGTCTCGAAGTCATTATGGATCTATCACGGGAGTTCAG
UFO05364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4074-RB | 1157 | CG4074-RB | 67..954 | 6..892 | 4400 | 99.8 | Plus |
| CG4074-RA | 1022 | CG4074-RA | 67..954 | 6..892 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20768593..20769361 | 774..6 | 3845 | 100 | Minus |
| 3L | 28110227 | 3L | 20768410..20768529 | 892..774 | 535 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:41 has no hits.
UFO05364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:19 Download gff for
UFO05364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4074-RA | 1..888 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:01 Download gff for
UFO05364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4074-RA | 63..957 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:31 Download gff for
UFO05364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4074-RA | 63..957 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:31 Download gff for
UFO05364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20768593..20769364 | 1..774 | 99 | | Minus |
| 3L | 20768416..20768528 | 775..886 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:01 Download gff for
UFO05364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20761516..20761628 | 775..886 | 99 | <- | Minus |
| arm_3L | 20761693..20762464 | 1..774 | 99 | | Minus |
