UFO05381.5prime Sequence
1028 bp (952 high quality bases) assembled on 2009-07-15
> UFO05381.5prime
CAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAGTAGCGGGT
AATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGGTGGTTTGT
GCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGACGCTAAAG
AGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATGAAGTGTCC
TTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAAATTACTGC
CGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCATGGAACGC
GTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCATGAATGTC
GATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTGATCGTTGT
GAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGTACGAGCTG
TTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACATGCACGAA
AATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACATAGTTTGGG
TGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAAGAGAGTCC
ACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCTACGATAAC
CCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAGTCCATCCA
GACCAATGGTGGCGTAAAGGGATTCGTAAAAGCCCATTGGAAAAGCCGCA
TTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAGACCTTGC
AGACTTGTTCCCATGCCCGGTCCGTGATTACTACGCCGAGGCCATCACCG
AGATAGTTCGGGCTTTCCAGTGCCAGACTACCAGGCTGCTCTGGACAATG
GAGTGGTGCAGCTCTTCACAGCGTCCGCCATGGCAGAGGATACGAATGCG
TACCATGGTGGAGGGCCACTTCTATGTGCCTGTAAACAGTGGAGCTCCCT
TCGGCAACTGAAAGCAGCTTTCTTAACT
UFO05381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17192-RA | 1052 | CG17192-RA | 4..1006 | 7..1004 | 4615 | 98 | Plus |
| CG17191-RA | 1090 | CG17191-RA | 69..797 | 53..782 | 1270 | 78.9 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 380..877 | 357..852 | 565 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27017226..27018187 | 1004..48 | 4115 | 97.7 | Minus |
| 3R | 32079331 | 3R | 27018901..27019629 | 782..53 | 1230 | 78.2 | Minus |
| 3R | 32079331 | 3R | 27020585..27020941 | 713..357 | 540 | 76.8 | Minus |
| 3R | 32079331 | 3R | 27022409..27022510 | 713..612 | 255 | 83.3 | Minus |
| 3R | 32079331 | 3R | 27018240..27018284 | 51..7 | 225 | 100 | Minus |
| 3R | 32079331 | 3R | 27025302..27025403 | 713..612 | 225 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:03 has no hits.
UFO05381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:13 Download gff for
UFO05381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17192-RA | 2..1016 | 5..1012 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:15 Download gff for
UFO05381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17192-RA | 2..1016 | 5..1012 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:52 Download gff for
UFO05381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17192-RA | 2..1016 | 5..1012 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:52 Download gff for
UFO05381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27017217..27018186 | 49..1011 | 97 | <- | Minus |
| 3R | 27018243..27018286 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:15 Download gff for
UFO05381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22842939..22843908 | 49..1011 | 97 | <- | Minus |
| arm_3R | 22843965..22844008 | 1..48 | 91 | | Minus |
