UFO05382.5prime Sequence
1040 bp (943 high quality bases) assembled on 2009-07-15
> UFO05382.5prime
CAGTCGACATGGCCAGCGACCCTGCCAATTCCAGAGACCAGATCAACATA
AACGCGGACGTTTCGGATATTTCCACTAGCGAGAGTGAGCTAACCAGCGA
CGACTATACTAGCGATAGCGAAGATGAGAGCTGCACAGTGGCCGATCCCG
ACACCAGTCCGCAGACGAGCATGTACAGTCTGCTGTCGGCAGAATCAGAC
AGCGACTTGGAGGAGGAGCAGGAGAATTTCTGCGAAGAGACTATTTCGCT
GCTTGCCCACGAGATCCTCTGCTGTGAGGGCGACAGTGAGGGCTCAGAGG
TAGAGTCCGACGGCGAGGACATCGACGAGGCCAGGGAATACGATATGTTT
GGAGAATCCTCAGAGTTTGGGCTTCCTACATACCGGCTCATGCTGAGCGA
CGAGGACGAAGATAATTCGAATGAGGTCGAAGTGGTAGGCAGTAATCCGT
TCGTTGGCGAGACAATCTTCCTGCTAGAAAAGGATAAGGATCAACAGAGC
GAGGAGAAGTCCGAGTCAAAGGAGGAAGAAAAAATCTTCCAAATGGAGCT
TTTTGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCTCACAACCGGCATGATGAACCTGAATCGCCACCGGCATCA
CACCTTGTCGCCTTGCGTATATATTGCCCTGGTGAAAACGGGGGCGAAAA
GTTGTTCCTATTTGTCCGCTTAATCAAACTGTGGAATCACCAGGATTGCT
GAACGAAAACAATTTCTTATTAACCTTTATGGAATAGCAG
UFO05382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1631-RA | 1178 | CG1631-RA | 159..709 | 7..557 | 2755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20327776..20328211 | 122..557 | 2180 | 100 | Plus |
| X | 23542271 | X | 20327602..20327722 | 7..127 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:29 has no hits.
UFO05382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:00 Download gff for
UFO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1631-RA | 102..659 | 1..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:39 Download gff for
UFO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1631-RA | 152..709 | 1..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:49 Download gff for
UFO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1631-RA | 152..709 | 1..557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:49 Download gff for
UFO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20327595..20327718 | 1..123 | 98 | -> | Plus |
| X | 20327778..20328211 | 124..557 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:39 Download gff for
UFO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20198622..20198745 | 1..123 | 98 | -> | Plus |
| arm_X | 20198805..20199238 | 124..557 | 100 | == | Plus |
