UFO05388.5prime Sequence
1050 bp (950 high quality bases) assembled on 2010-04-05
> UFO05388.5prime
CAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAGTAACGGGA
GCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTTTCATTTAG
ACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCAATGCCGTC
AACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTAGGAAGTCA
ATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGACGAGTCTGG
GACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGTATCCATAT
TCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACGCAATATCG
AAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAGAATATTGA
ACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGATGAAATAC
ACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATCGTATTGCC
CATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAGAGGGATGA
AAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATACAATACCAA
CGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATTGGGTTGGT
GGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTGAAGTTTTT
GGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGGGCTGAAAA
ACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGCGATCGATT
TCGATTCAGTTCATGTTTATACCGGTCCTCTGTTATGCCCAAGGATACGT
TCAGAACTGGTCTGTGCGTACATGTATGGGCATGACACGTTGCTGTTCCA
ACGCACTTCTCAAATCATCATAAGAGAGATGAGTTTAATAGGATATGCCA
TATGAAGTATGTTGTCCCAATGCATATGTCGACAAGAATGATCTGCGCTC
ATTTAGCGATTTTCTGTATATGAACCTGCAGACTCAAATTCTTGTGATGC
UFO05388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tengl4-RA | 1408 | CG4683-RA | 149..1168 | 9..1004 | 4510 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10950874..10951485 | 345..942 | 2420 | 97.2 | Plus |
| 3R | 32079331 | 3R | 10950643..10950819 | 168..344 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 10950432..10950590 | 9..167 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:57:40 has no hits.
UFO05388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:26 Download gff for
UFO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4683-RA | 104..1185 | 1..1050 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:50 Download gff for
UFO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tengl4-RA | 139..1220 | 1..1050 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:58 Download gff for
UFO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tengl4-RA | 139..1220 | 1..1050 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:58 Download gff for
UFO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10950422..10950590 | 1..167 | 98 | -> | Plus |
| 3R | 10950643..10950819 | 168..344 | 100 | -> | Plus |
| 3R | 10950874..10951609 | 345..1050 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:50 Download gff for
UFO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6776144..6776312 | 1..167 | 98 | -> | Plus |
| arm_3R | 6776365..6776541 | 168..344 | 100 | -> | Plus |
| arm_3R | 6776596..6777331 | 345..1050 | 94 | | Plus |
