UFO05394.5prime Sequence
1096 bp (993 high quality bases) assembled on 2010-04-05
> UFO05394.5prime
CAGTCGACATGCAGAAGCGTAAACGCCGCTTCCTAAAAAAAGGGCAGAAC
TTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAAAAAGGCTGAGCT
CCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAATGTAAATTAACCT
CCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAGAGCAATACGATA
GGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAACAAAATTCGAGC
CGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCTCATCGGAGCACT
CAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTGATTCGCCTTCTT
CAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATTGAGTTTGGGGAA
TCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCATAAGACACGGAC
TTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGCACTTGCACTTTA
ATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTGCATAAGCTCTCA
ACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGGCATTGAACATAG
TATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCACTTATGGCAGTG
CGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTTACTTGATTTTGA
AGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGAACGTTACGGTTC
AGAACGCCGCACTGCAAGCCCTAATAAATATAGCAACTGGATCCGAAGAG
CAGATTCAAGAGTTGCTTAACAATAACCTTTTGCCCCATTTATCGGCTCT
GATGTCCATAGTGATCCAGATATTCGCTGTCAAGTTCTTAAGCTTTGCTA
AACATCGCTGACGAAATATTTTCCAAAGCCCCGCCATTATGAATGCAGTC
TCCTGCATAAAATACTGGAGTGCTTAAAAGCCTGATGCGATTTCATAAAT
CTGCAGCTGCTTGAAAATCACCCCGTGTCATCGATAAGACCAGATCTCTC
TGGGCTTCTTAAAAACAGGAAACTTCGAGATTCTCTCGCGACATTA
UFO05394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..1108 | 9..1038 | 4875 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009861..6010584 | 1026..309 | 3185 | 98.2 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 308..9 | 1500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:47 has no hits.
UFO05394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:22 Download gff for
UFO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1024 | 9..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:03 Download gff for
UFO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1094 | 9..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:19 Download gff for
UFO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1094 | 9..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:19 Download gff for
UFO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009861..6010584 | 309..1026 | 98 | <- | Minus |
| 3L | 6010652..6010951 | 9..308 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:03 Download gff for
UFO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002961..6003684 | 309..1026 | 98 | <- | Minus |
| arm_3L | 6003752..6004051 | 9..308 | 100 | | Minus |
