UFO05401.5prime Sequence
1102 bp (999 high quality bases) assembled on 2009-07-06
> UFO05401.5prime
CAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGAATCCTCCG
GAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGTTACGAAAA
AGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGCCAGCGCCA
AGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGGAATATACG
GCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACGATGATCGT
GGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACTATTTACAA
CTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGAGGATTCTT
CGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATTTATCACAG
TCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGAGATGGGAT
ATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCAGCAGTGCC
TACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTTATTCACGA
GCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGAAATGCCCG
GGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCATTTATGGAA
ATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCATTTTAAGAA
AATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCAGGAGTATC
GAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAGACTTCCAT
TCCCGCAACATGATGTTTAAGAACAATAAGGAAACAGGATGCTTCGAGGA
CTGCATGCTGCTGGATTATCAGGCTGTAATGTGCTCCAATGGACGTTGAT
CTTATGTACTCCATTTACATGTTGATGGGGCCAGCACAGCGAGAGAGGAG
CTGGACATTTTGTTAAACTACTACCTATCATCCTCCTAGAGACTCTCAGA
GATGGCTACAGATCATGCCGACGAACAGATTTGGGCGAAATGAACGCCAC
AGATATTACGAGTTTCTACTGCTGAACACATTCTTGCAGGTTCGATTGGT
TG
UFO05401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 21..1129 | 9..1099 | 5055 | 98 | Plus |
CG31370-RB | 1408 | CG31370-RB | 682..976 | 629..921 | 365 | 75.8 | Plus |
CG31436-RA | 1402 | CG31436-RA | 195..529 | 114..448 | 310 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25300911..25301453 | 9..551 | 2700 | 99.8 | Plus |
3R | 32079331 | 3R | 25301518..25301970 | 550..998 | 2050 | 98.9 | Plus |
3R | 32079331 | 3R | 25303208..25303447 | 629..868 | 330 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:41 has no hits.
UFO05401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:19 Download gff for
UFO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1113 | 9..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:44 Download gff for
UFO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 14..1133 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:16 Download gff for
UFO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 14..1133 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:16 Download gff for
UFO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25300904..25301453 | 1..551 | 99 | -> | Plus |
3R | 25301520..25302045 | 552..1060 | 96 | -> | Plus |
3R | 25302106..25302134 | 1061..1088 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:44 Download gff for
UFO05401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21126626..21127175 | 1..551 | 99 | -> | Plus |
arm_3R | 21127242..21127767 | 552..1060 | 96 | -> | Plus |
arm_3R | 21127828..21127856 | 1061..1088 | 93 | -> | Plus |