Clone UFO05401 Report

Search the DGRC for UFO05401

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:54
Well:1
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG13659-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05401.5prime Sequence

1102 bp (999 high quality bases) assembled on 2009-07-06

> UFO05401.5prime
CAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGAATCCTCCG
GAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGTTACGAAAA
AGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGCCAGCGCCA
AGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGGAATATACG
GCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACGATGATCGT
GGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACTATTTACAA
CTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGAGGATTCTT
CGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATTTATCACAG
TCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGAGATGGGAT
ATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCAGCAGTGCC
TACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTTATTCACGA
GCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGAAATGCCCG
GGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCATTTATGGAA
ATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCATTTTAAGAA
AATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCAGGAGTATC
GAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAGACTTCCAT
TCCCGCAACATGATGTTTAAGAACAATAAGGAAACAGGATGCTTCGAGGA
CTGCATGCTGCTGGATTATCAGGCTGTAATGTGCTCCAATGGACGTTGAT
CTTATGTACTCCATTTACATGTTGATGGGGCCAGCACAGCGAGAGAGGAG
CTGGACATTTTGTTAAACTACTACCTATCATCCTCCTAGAGACTCTCAGA
GATGGCTACAGATCATGCCGACGAACAGATTTGGGCGAAATGAACGCCAC
AGATATTACGAGTTTCTACTGCTGAACACATTCTTGCAGGTTCGATTGGT
TG

UFO05401.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 21..1129 9..1099 5055 98 Plus
CG31370-RB 1408 CG31370-RB 682..976 629..921 365 75.8 Plus
CG31436-RA 1402 CG31436-RA 195..529 114..448 310 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25300911..25301453 9..551 2700 99.8 Plus
3R 32079331 3R 25301518..25301970 550..998 2050 98.9 Plus
3R 32079331 3R 25303208..25303447 629..868 330 75.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:26:41 has no hits.

UFO05401.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:19 Download gff for UFO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1113 9..1102 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:44 Download gff for UFO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 14..1133 1..1102 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:16 Download gff for UFO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 14..1133 1..1102 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:16 Download gff for UFO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25300904..25301453 1..551 99 -> Plus
3R 25301520..25302045 552..1060 96 -> Plus
3R 25302106..25302134 1061..1088 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:44 Download gff for UFO05401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21126626..21127175 1..551 99 -> Plus
arm_3R 21127242..21127767 552..1060 96 -> Plus
arm_3R 21127828..21127856 1061..1088 93 -> Plus