UFO05404.5prime Sequence
1078 bp (964 high quality bases) assembled on 2009-07-06
> UFO05404.5prime
CAGTCGACATGGAGCCAAAGTCGCAGGATCAGGCTCCAAATCGGGACGAT
CCTGACCTGCAGACTGAGCCTCTGACCATAGCCCAGTCCATAACCTCTTT
CTACATGTACAATCCCTACGAGAAGCGAAGTGTGGAGGTGCCCCTAACTA
ACTGTGACGCCTTCATTTCCCTGTTAAAATGTGTGATTGGAACGGGCATT
CTGGCAATGCCGCTGGCCTTTCGATGCTCGGGATTCGTGATGGGCACCGT
GATGTCCATTCTGCTGATGATACTCCTGACGTACTCCATCCACTTGCTGA
TAGCTGACATGACGGAGTGCTGTCGAAGGCGCCGAGTTCCTCAAGTTTCC
ATGCCGGAGGCCGTGAGGATTGCCTACGAGGAGGGTCCCAAGTGGATCAA
TTGCTTTGGTCGGGCCGCTGGTTTTATGACCACTTGCGTTTTGGTCTTCG
GTCAGTTTCTGCTGTGCACCGTTTATCTGGTTTTCGTGTCCAAGAACTTC
AAGGAAATCGGTGACCATTATATTGAGAGGTACAATGAAAGGTATTATGT
GCTGGTCGCCTGTTTGCTGCTCTTGCCGCTCTTCATGATCCGCCGTCTAA
AGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTATACGCGGGA
TTCGCCCTAATCATGTACTATCTGTTCAATGGTCTTCCCAATATTAATGA
TCGTGAGATGGTCACACCTCCTGTCGAATGGATTGAATTCATAGCCATCG
CCGCCTTTTCCCTCACAGCCGTGGGTTCTATGCTCGTCGTCGAGGCCCAT
ATGGCACATCCGCAGAGCTATCTGGGCTCTTTGGAGTCCTCAATCTTGCT
GTTTTATTCATCCTGCTCTCGAACATGTTTTTTGGAATCATCGGCTATTG
GCGTTTCGGAGACAATGTCCATGCCAGTATTACCTTAATATTCCACAGAT
GAAATCCTTTCCAGTCATAAGTATTTATTGCCTCTGCAGATTTCTGAGTA
TCCTCTGATGTTCGTATGATCCATGATGTTACGACATGAACTCTGACGAG
GGCAGGATCGAGCTATGATCGTGTCGAT
UFO05404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polyph-RA | 1546 | CG12943-RA | 92..1100 | 9..1008 | 4775 | 98.8 | Plus |
| polyph-RC | 1502 | CG12943-RC | 92..1045 | 9..955 | 4610 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10904157..10904637 | 299..779 | 2405 | 100 | Plus |
| 2R | 25286936 | 2R | 10903945..10904095 | 149..299 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 10904698..10904868 | 780..948 | 740 | 98.2 | Plus |
| 2R | 25286936 | 2R | 10903661..10903734 | 9..82 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 10903794..10903859 | 83..148 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:17 has no hits.
UFO05404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:26 Download gff for
UFO05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12943-RA | 85..1100 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:19 Download gff for
UFO05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12943-RA | 85..1100 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:52 Download gff for
UFO05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polyph-RA | 85..1100 | 1..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:52 Download gff for
UFO05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10903945..10904095 | 149..299 | 100 | -> | Plus |
| 2R | 10903654..10903734 | 1..82 | 95 | -> | Plus |
| 2R | 10903794..10903859 | 83..148 | 100 | -> | Plus |
| 2R | 10904158..10904637 | 300..779 | 100 | -> | Plus |
| 2R | 10904698..10904876 | 780..955 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:19 Download gff for
UFO05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6792203..6792381 | 780..955 | 97 | -> | Plus |
| arm_2R | 6791159..6791239 | 1..82 | 95 | -> | Plus |
| arm_2R | 6791299..6791364 | 83..148 | 100 | -> | Plus |
| arm_2R | 6791450..6791600 | 149..299 | 100 | -> | Plus |
| arm_2R | 6791663..6792142 | 300..779 | 100 | -> | Plus |
