UFO05405.5prime Sequence
1150 bp (1018 high quality bases) assembled on 2009-07-06
> UFO05405.5prime
CAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATATGGACCTTC
TTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAATCCTTTTCA
ACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAATACGATAC
AATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAGTGCAGAGT
GACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCTGGAGCCCT
GCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATACCTGGGTGA
TGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGCAGGGCTAC
GACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAACGCCATGT
TCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTTCCATGAGA
TGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGATGCAATCT
GGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCAACTATCTT
CTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGATCGTTATGA
TGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTAGTCCCATT
GTGAATTTGTTGGCCTCTCAGGATACTGCAGTTGCCTCCTTCCTAAGCGC
GGCTGGCTACAATGAGTTCCTGCCCAGCAACAGTGTGATTGATCAGTTCA
AGCGTTATGCCTGCCGGGATATCATTTCCAGCAGTGTCTGTCAGAGTCTC
TTCTTTATTCTTTTCGGTTTCAATGGCCAGCAAGTGAACCAAACGATGTT
GCCGATCGTAGTGGGTCACACTCCGGCCGGTGCATCCATCAGGCAGATGC
ACCCACTACGGCCAGCTGAGGAACTTCTGGGAAATTCCAGCAGTTTGACT
ACGGACTGTTGAACTTTCTTGCATTATGGCAGCCTGTCCCCCACCGCCTT
ATGAACTGGGAGAAAGTCAAGGCCAAGGTGCAATCTATTTATGCCAAAAC
GATTGATAGCTCCGCCGAAGATGTGGACATGCTTTCAACAGTTGCCCAAT
GTGGGTGAAAGAATCTCGTTCCGAATGAAACTTAACACTTCGAATCTGTT
UFO05405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1371 | CG18301-RA | 32..1170 | 9..1143 | 5265 | 98.3 | Plus |
Lip4-RC | 1936 | CG6113-RC | 456..955 | 129..628 | 385 | 73.4 | Plus |
Lip4-RB | 1861 | CG6113-RB | 605..1104 | 129..628 | 385 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10532567..10532930 | 323..686 | 1820 | 100 | Plus |
2L | 23513712 | 2L | 10532986..10533430 | 687..1130 | 1565 | 95.6 | Plus |
2L | 23513712 | 2L | 10532334..10532513 | 146..325 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10531852..10531989 | 9..146 | 690 | 100 | Plus |
2L | 23513712 | 2L | 10530305..10530617 | 316..628 | 290 | 72.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:58 has no hits.
UFO05405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:28 Download gff for
UFO05405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 1..1145 | 9..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:20 Download gff for
UFO05405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 25..1176 | 1..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:40 Download gff for
UFO05405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 25..1176 | 1..1150 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:40 Download gff for
UFO05405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10531845..10531989 | 1..146 | 97 | -> | Plus |
2L | 10532335..10532512 | 147..324 | 100 | -> | Plus |
2L | 10532569..10532930 | 325..686 | 100 | -> | Plus |
2L | 10532986..10533452 | 687..1150 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:20 Download gff for
UFO05405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10531845..10531989 | 1..146 | 97 | -> | Plus |
arm_2L | 10532335..10532512 | 147..324 | 100 | -> | Plus |
arm_2L | 10532569..10532930 | 325..686 | 100 | -> | Plus |
arm_2L | 10532986..10533452 | 687..1150 | 95 | | Plus |