Clone UFO05405 Report

Search the DGRC for UFO05405

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:54
Well:5
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG18301-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05405.5prime Sequence

1150 bp (1018 high quality bases) assembled on 2009-07-06

> UFO05405.5prime
CAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATATGGACCTTC
TTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAATCCTTTTCA
ACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAATACGATAC
AATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAGTGCAGAGT
GACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCTGGAGCCCT
GCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATACCTGGGTGA
TGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGCAGGGCTAC
GACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAACGCCATGT
TCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTTCCATGAGA
TGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGATGCAATCT
GGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCAACTATCTT
CTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGATCGTTATGA
TGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTAGTCCCATT
GTGAATTTGTTGGCCTCTCAGGATACTGCAGTTGCCTCCTTCCTAAGCGC
GGCTGGCTACAATGAGTTCCTGCCCAGCAACAGTGTGATTGATCAGTTCA
AGCGTTATGCCTGCCGGGATATCATTTCCAGCAGTGTCTGTCAGAGTCTC
TTCTTTATTCTTTTCGGTTTCAATGGCCAGCAAGTGAACCAAACGATGTT
GCCGATCGTAGTGGGTCACACTCCGGCCGGTGCATCCATCAGGCAGATGC
ACCCACTACGGCCAGCTGAGGAACTTCTGGGAAATTCCAGCAGTTTGACT
ACGGACTGTTGAACTTTCTTGCATTATGGCAGCCTGTCCCCCACCGCCTT
ATGAACTGGGAGAAAGTCAAGGCCAAGGTGCAATCTATTTATGCCAAAAC
GATTGATAGCTCCGCCGAAGATGTGGACATGCTTTCAACAGTTGCCCAAT
GTGGGTGAAAGAATCTCGTTCCGAATGAAACTTAACACTTCGAATCTGTT

UFO05405.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1371 CG18301-RA 32..1170 9..1143 5265 98.3 Plus
Lip4-RC 1936 CG6113-RC 456..955 129..628 385 73.4 Plus
Lip4-RB 1861 CG6113-RB 605..1104 129..628 385 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10532567..10532930 323..686 1820 100 Plus
2L 23513712 2L 10532986..10533430 687..1130 1565 95.6 Plus
2L 23513712 2L 10532334..10532513 146..325 900 100 Plus
2L 23513712 2L 10531852..10531989 9..146 690 100 Plus
2L 23513712 2L 10530305..10530617 316..628 290 72.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:07:58 has no hits.

UFO05405.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:28 Download gff for UFO05405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 1..1145 9..1150 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:20 Download gff for UFO05405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 25..1176 1..1150 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:40 Download gff for UFO05405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 25..1176 1..1150 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:40 Download gff for UFO05405.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10531845..10531989 1..146 97 -> Plus
2L 10532335..10532512 147..324 100 -> Plus
2L 10532569..10532930 325..686 100 -> Plus
2L 10532986..10533452 687..1150 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:20 Download gff for UFO05405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10531845..10531989 1..146 97 -> Plus
arm_2L 10532335..10532512 147..324 100 -> Plus
arm_2L 10532569..10532930 325..686 100 -> Plus
arm_2L 10532986..10533452 687..1150 95   Plus