UFO05406.5prime Sequence
1097 bp (992 high quality bases) assembled on 2009-07-06
> UFO05406.5prime
CAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGCTCCTCGGT
GGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGTAAAGTGTC
CTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCAGAATCAGA
CGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCAATGGGAGC
TACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGAAATGCAGG
CGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAAGATCCACG
GAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAACGAAAGAG
TCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAGAAGCGCGT
GGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTCGGACGGGA
ACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACGCCAGTGTG
CCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAGACCCGCAA
GCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGGCGAGCAGC
ATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCAATCGCGGC
GACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGCGGAAGTTC
CGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCACTACGTCC
CGGTTTGGACCACGGAGCGAGTGCCGCAGGAGCAGGGACAGATCTATCGG
CGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAGTTCAGACG
CCGTCGGATAGCAAAGCCAGAGAGAGCAGACGGATCAGCACACAAGGTGT
CATCACAGTGGGGTTGTCCAGGTGGTGATGGCAAGTGGAGCGCCTTCCTC
CGCAAGCTTTCTAGACCATCGTTTGGCGCCGCGGGCCAGGTAGTGGTCAT
TATTCATATTCATAATCATATTCATATCACCACTAGCTAGGAGATCTGGT
CATGACTAGTGGCCTGATCTCACCAATAAAAACGCCCCCGGGCACGA
UFO05406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17350-RA | 1115 | CG17350-RA | 77..1033 | 4..951 | 4545 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19382538..19382984 | 486..927 | 1990 | 98.4 | Plus |
| 2L | 23513712 | 2L | 19381863..19382131 | 80..348 | 1345 | 100 | Plus |
| 2L | 23513712 | 2L | 19382196..19382335 | 347..486 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 19381012..19381086 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:51 has no hits.
UFO05406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:29 Download gff for
UFO05406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17350-RA | 74..1033 | 1..951 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:10 Download gff for
UFO05406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17350-RA | 74..1033 | 1..951 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:43 Download gff for
UFO05406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17350-RA | 74..1033 | 1..951 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:43 Download gff for
UFO05406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19381003..19381084 | 1..81 | 96 | -> | Plus |
| 2L | 19381865..19382131 | 82..348 | 100 | -> | Plus |
| 2L | 19382198..19382335 | 349..486 | 100 | -> | Plus |
| 2L | 19382539..19382984 | 487..927 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:10 Download gff for
UFO05406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19381003..19381084 | 1..81 | 96 | -> | Plus |
| arm_2L | 19381865..19382131 | 82..348 | 100 | -> | Plus |
| arm_2L | 19382198..19382335 | 349..486 | 100 | -> | Plus |
| arm_2L | 19382539..19382984 | 487..927 | 98 | == | Plus |
