UFO05408.5prime Sequence
1113 bp (1002 high quality bases) assembled on 2009-07-06
> UFO05408.5prime
CAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAAAGTACTAT
AGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCACTTTCAGGC
GCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGACCAATGGCT
ACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCTTCCGACAG
GAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTGGTCGGAGA
TATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCTAACCTACA
AGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGCTTCACTCC
CTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTTATACTTAT
ACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAGCGAGCAGA
CCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGTATCGTATG
CTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGATAATATGTC
CAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAACAATCCACG
ATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAATAGTCTGG
ATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAGATCAATCG
CCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATACCTCGAGT
TCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAAAGAACTAC
AATTATCGAATTCAGGATCGCCTCTAGTCCAGGAGCTAAAGCTGGTTCCT
GAAGAGGATTTGCCCATTTTGTGGATAGGCGAACGCAAGTACAGAGGAAA
CGATATCCGCATTGCCGAAGATGAAGCTGGAGTACATTGGTGCCCGGTTC
GCAGCTCAGCTTTATAGATGTATCGCACGGCATCATGGGGCATCCCAAGA
GCCTCTACCAACACGCCTTCTTAGTCTCGACTGGGCGGCTGTCCGCTTCC
CAACTTCCTCGGGAAAAGTTCGATCGTAACATATAAATCAGGAAACCCAC
CTGCAATACCAGA
UFO05408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31467-RA | 1694 | CG31467-RA | 130..1224 | 9..1106 | 5130 | 98.4 | Plus |
| CG31391-RA | 1704 | CG31391-RA | 99..1128 | 21..1053 | 1880 | 79.3 | Plus |
| CG14689-RA | 1661 | CG14689-RA | 526..1093 | 431..999 | 405 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10705672..10706734 | 1075..9 | 4920 | 98.7 | Minus |
| 3R | 32079331 | 3R | 10704190..10704977 | 808..21 | 1750 | 81.5 | Minus |
| 3R | 32079331 | 3R | 10710947..10711140 | 201..8 | 400 | 80.4 | Minus |
| 3R | 32079331 | 3R | 10710215..10710723 | 939..431 | 320 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:27 has no hits.
UFO05408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:30 Download gff for
UFO05408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31467-RA | 122..1229 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:25 Download gff for
UFO05408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31467-RA | 122..1229 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:56 Download gff for
UFO05408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31467-RA | 122..1229 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:56 Download gff for
UFO05408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10705631..10706738 | 1..1112 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:25 Download gff for
UFO05408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6531353..6532460 | 1..1112 | 97 | | Minus |
