UFO05409.5prime Sequence
1084 bp (956 high quality bases) assembled on 2009-07-06
> UFO05409.5prime
CAGTCGACATGAGTACCGCTAATCATTTTCAAAGAATTCTTGAGAAATTG
TCAATCTCTGACAATGAAAGGGCCGTATATACCAAGGAAGCCGAGGAAAT
TCAAAACTATGTAGTTGACGAACTTAAGCGGGTAGACAAAACCTTTCGCC
AGGTATTCGACGGACTCAGTCTTGGAGGAAGTTACTTGGATCGCGTCAAG
CTAAATTTGCCCGATGAATTTGATCTGCACATGAAACTAAAGTTTCCATT
TGATATCCGACCGACTCGGATCGACCAAGGGTTTATTTATTTAGAGGCTG
ATCTCACCGTAATCAATCCCCAACGCATCCATCGTATTGTACTTCAAGAC
TGGCTACGCAATGCATTCCGCAAGGTATTCAGGTCTAATCAGACAATTGC
CACTACCAGTAATCGAGTCTACAAATTAACCTATACTCTTGAGGGGTATG
GTTGTGCCCATACCATTTTAGCCGTTTGTGGTAGTCGCTCGATATCTTTT
GATTTGGTACCAGCATTCGAATTCTCTGGAAGCCAATGGCCGTTTGATAT
TTGCCCGGTTCCTGCTGATGTTAGCAATAATTGGCCATGGTTCGCCATTC
CGCAACAGAAGAAGAAGTCGGCTAAACCGAGAACCACATTCATGGTTTGT
GCACCACATTGAGAGCGCGAAATTATGAAGGGCAAGGATAATTTGAAGAA
CGTTCTACGGCTGATGAAAGGATTGCGGGATGCCCACGCCAGGAAATTGC
CTCACTTGTCCAGCTACATGTTGAAAACAGTTTTGCTTCATCGCCTCGAA
AGTGCTGACTGGGAAAGAGACCTGGCACCCTATTGGTTGAGATGTGGAGT
CATTTGGTGGATCATCTACGCGCTCGTAGACTGGAGTTCTTTTTGGCTCG
ATCATATGTATTCATCGTATGAATCAAATGAATCAGATATGTTCTAGAAA
ACGCAGCACTCTGCTAAGAAAGCTTTGTATTGCTCAGAAATGGGGTGGTA
GCTACCATCATGGGGGCCACTATTCAATATTCGAATGCAGCCTTCTAGAA
CATCGTTGGCCGCGGCCCAGTAGTGCCGTATCTA
UFO05409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 70..1102 | 9..1032 | 4815 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302627..8303492 | 1032..176 | 3735 | 97.8 | Minus |
| 3L | 28110227 | 3L | 8303821..8303990 | 178..9 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:48 has no hits.
UFO05409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:32 Download gff for
UFO05409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1111 | 9..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:46 Download gff for
UFO05409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1111 | 9..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:16 Download gff for
UFO05409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1111 | 9..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:16 Download gff for
UFO05409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302618..8303490 | 178..1040 | 97 | <- | Minus |
| 3L | 8303822..8303990 | 9..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:46 Download gff for
UFO05409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8296922..8297090 | 9..177 | 100 | | Minus |
| arm_3L | 8295718..8296590 | 178..1040 | 97 | <- | Minus |
