UFO05411.5prime Sequence
1033 bp (934 high quality bases) assembled on 2009-07-06
> UFO05411.5prime
CAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCCAGCAGAGC
AAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCACGGTATGCA
CGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGATCGCGGCT
GGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGGAGACCTGC
TGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAGCTCTCCAA
GTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCGCGACGGCA
AGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAGCCGATGCC
GATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCGCAACCCCA
GCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGTTGCATCAC
TGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTGCCGCGGTG
GAAGCTCCTACGTTGGGGTCCAACAAATCCGCAGCACCGATCTCAAACAA
GCCGTGCAAGAAGGCCAAGCAGATGCGATTGGATCGACGGCTGGCCAAGC
TGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGGAAAAGACA
CTTCGCGACTTCTTGAACACGGACAGCGAGACAAACAAACATCGGCTAAA
GCTGCGCTTAATTCACGTCTACGACGACGAGTTCCGGCGGACCCTGCCCC
AGAGTTTTGCGCTCTATAAGAAGTATCAGATATCGATACATAATGATCCG
CCAAAGGATCAGACGCGTACAAGAGCATCTGCAGGCGACTCCCCTACAGA
ATGAGAAACCCTGGATGGTCCCGAAATGGGCTACGGTTCGTTTCATCAGC
AGTACTGCTGACGACAGTGATGCGTCGGCGTGATGACATTCTGCCGGTGT
GTAGCTCGTGTACTTTTTCTACGATCGACTAAGCTTTTTATCGCTGCACA
ATATGCTCATCAGATGATGGTGCAGTTCGCTCG
UFO05411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1622 | CG9204-RA | 109..1112 | 9..995 | 4615 | 98.3 | Plus |
| Ate1-RB | 1643 | CG9204-RB | 109..1133 | 9..995 | 4395 | 96.3 | Plus |
| Ate1-RC | 1625 | CG9204-RC | 109..801 | 9..701 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 528..93 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256608 | 706..529 | 875 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20255886..20256037 | 849..700 | 660 | 98.7 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 95..9 | 435 | 100 | Minus |
| 2R | 25286936 | 2R | 20255751..20255812 | 907..847 | 260 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:39 has no hits.
UFO05411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:15 Download gff for
UFO05411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 100..1114 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:40 Download gff for
UFO05411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1123 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:06 Download gff for
UFO05411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1123 | 9..1005 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:06 Download gff for
UFO05411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255886..20256035 | 702..849 | 98 | <- | Minus |
| 2R | 20256436..20256608 | 529..701 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 94..528 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 9..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:40 Download gff for
UFO05411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143391..16143540 | 702..849 | 98 | <- | Minus |
| arm_2R | 16143941..16144113 | 529..701 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 94..528 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 9..93 | 100 | | Minus |
