UFO05415.5prime Sequence
1129 bp (985 high quality bases) assembled on 2009-07-06
> UFO05415.5prime
CAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCACGGACCAG
GAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTCATGCACCA
TGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGAAGCCGACG
CGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCAAATCCTTT
CTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTCCTGGGCGG
ATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCATGCGCTACC
ACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGATGGCGCGG
GTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGCTCCTTGCT
ACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGACGAGAGCC
ACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACGAGGGCTAC
GCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGTCGCTTCAT
GCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTACCACCGGAC
GGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCCCGACCAGC
TTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAACATAGATAC
GGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCATCACCGATG
TCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATATGAAGTCT
ACATGATGGAGAAGTTCGTCTCAGCGTCTCGAAGAGATCGGCTGATCCGC
TGCCGGAGTCAGCCAAGTACGCCGAGTCATGGGCAAGGCGTCATCGAGTA
CGACCTGGCCACATCGCCGAGGTGGAGGCCTACGAGGCCAACGAGGCTAG
GCAACAGCCGCAAGCTTTCTAGAACATTCGTTTGGCGCGCGGCCCAGGTA
GTGGTCATATCATATCATATCATAATCATAATCCAACTAGCTAGGAGATC
TGGTCATGACTATGGCTGGATTCCACAATAAAAAGGCCGCGGCACCGACG
TCTGGAACATCATGGATTGAGTCATATCT
UFO05415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3662-RD | 1731 | CG3662-RD | 263..1217 | 8..957 | 4650 | 99.5 | Plus |
| CG3662-RC | 1570 | CG3662-RC | 130..1084 | 8..957 | 4650 | 99.5 | Plus |
| CG3662-RA | 1651 | CG3662-RA | 130..1084 | 8..957 | 4650 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 822858..823566 | 117..824 | 3495 | 99.9 | Plus |
| 2L | 23513712 | 2L | 821551..821659 | 8..116 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 823636..823770 | 826..957 | 525 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:31 has no hits.
UFO05415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:37 Download gff for
UFO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3662-RA | 130..1099 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:30 Download gff for
UFO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3662-RA | 126..1095 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:22 Download gff for
UFO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3662-RA | 126..1095 | 1..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:22 Download gff for
UFO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 821547..821659 | 1..116 | 97 | -> | Plus |
| 2L | 822858..823569 | 117..826 | 99 | -> | Plus |
| 2L | 823637..823770 | 827..957 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:30 Download gff for
UFO05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 821547..821659 | 1..116 | 97 | -> | Plus |
| arm_2L | 822858..823569 | 117..826 | 99 | -> | Plus |
| arm_2L | 823637..823770 | 827..957 | 97 | == | Plus |
