UFO05418.5prime Sequence
1135 bp (1005 high quality bases) assembled on 2009-07-06
> UFO05418.5prime
CAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAAACGGCGAG
GATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAAAATGGTGA
TGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCAATCGGCCG
CATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTGGTCTGAGC
TGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAATATGGCGA
GATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCGGTCCCGAG
GATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACAAAGTCAGC
GCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCCAAGAAGGC
CAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCACAGAGATCA
GCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATATCGTCGAG
GTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGATTCTGCTT
CATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAAGACGCCCA
AGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGACGCCCAAG
CCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGCGGTGGTAT
GCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAACAACCAGT
GGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACGGCGGATAT
GGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTATAATGGATA
TGACTACGGTTATGGCGGTGGCGGTTTTAACGGTGGCAAGCAGCGCGGGA
GGCGGTGGACGCCAGCAGCGGCATCAGCCCTACGCAAGCTTTCTAGAACA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATATCATAATCATATCAT
AATCATAATCACCACTAGCCTAGGAGATCCTGGTCATGACTAGGGCTTGG
ATTCTCACCAATAAAAACGCCCGCCGGCCACCGGCGTCTGACCAATCAAT
GGGTTCTGAGGTCATACTGGATCTTATCACGGATC
UFO05418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RC | 2239 | CG16901-RC | 111..1034 | 9..933 | 4600 | 99.9 | Plus |
sqd-RE | 2844 | CG16901-RE | 386..1309 | 9..933 | 4600 | 99.9 | Plus |
sqd-RA | 5551 | CG16901-RA | 115..971 | 9..865 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643103 | 491..217 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 13642511..13642755 | 736..492 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 13645752..13645919 | 176..9 | 840 | 100 | Minus |
3R | 32079331 | 3R | 13642298..13642428 | 865..735 | 655 | 100 | Minus |
3R | 32079331 | 3R | 13636458..13636526 | 933..864 | 300 | 98.6 | Minus |
3R | 32079331 | 3R | 13643169..13643212 | 216..173 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:52 has no hits.
UFO05418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:38 Download gff for
UFO05418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RC | 378..1312 | 1..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:50 Download gff for
UFO05418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RE | 378..1312 | 1..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:22 Download gff for
UFO05418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RE | 378..1312 | 1..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:22 Download gff for
UFO05418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13636458..13636525 | 865..933 | 98 | <- | Minus |
3R | 13642299..13642427 | 736..864 | 100 | <- | Minus |
3R | 13642512..13642755 | 492..735 | 100 | <- | Minus |
3R | 13642829..13643103 | 217..491 | 100 | <- | Minus |
3R | 13643169..13643209 | 176..216 | 100 | <- | Minus |
3R | 13645753..13645925 | 1..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:50 Download gff for
UFO05418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9468551..9468825 | 217..491 | 100 | <- | Minus |
arm_3R | 9468891..9468931 | 176..216 | 100 | <- | Minus |
arm_3R | 9471475..9471647 | 1..175 | 97 | | Minus |
arm_3R | 9462180..9462247 | 865..933 | 98 | <- | Minus |
arm_3R | 9468021..9468149 | 736..864 | 100 | <- | Minus |
arm_3R | 9468234..9468477 | 492..735 | 100 | <- | Minus |