UFO05419.5prime Sequence
1138 bp (1008 high quality bases) assembled on 2009-07-06
> UFO05419.5prime
CAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCGGTGCGTCC
ATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTGATTATGCA
AGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAATTGTCAACA
GATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATGGCTCATGC
CCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATCTTTTCGGC
ATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCAGTTCAATG
ATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGATTGTGCCC
GCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAGATCAAGGA
AATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGAAATGCTAC
CCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCGAGCAGATC
ACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCCCCGCCACG
CGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGGCCCCGTCA
TCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACGCGGTGCCC
ACACAAGAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCCTTGGGCCT
GGCTGGGATGAATCCGGCCAGCACTGGGGGCATCAACCACACAGCAGCCT
TGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCGCGAACCGA
GCCCAGCAGCAGCAGCACGAGATGACCGTCTCAAACGACCTGATTGGCTG
CATCATCGGCAAGGGTGGCACCAAGATCGCCGAGATTCGCCAAATATCCG
GCGCCATGATCCGGATCTCCAACTGCGAGGAGCGGCGAAGGGCGGCATAC
CGACCGCACCATCACATCAGCGGCATCCCGGACTCGGTGGCCTGGCCCAT
ACTTTAATTTATTATGAAAATTATCAATGGAAGACTGGCTGGTCTGCCCA
TACCTGGTTATCAACTACATTGCGCCCAGTGCATTGTTAAACACCCATTC
ACGCAGCTTCTAAACATTCGTTGGGCGCGCGGGGCCAG
UFO05419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 841..1933 | 8..1102 | 5095 | 98.4 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..2004 | 8..1102 | 4965 | 97.3 | Plus |
| mub-RG | 3468 | CG7437-RG | 953..2030 | 8..1102 | 4850 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21921051..21921301 | 742..992 | 1055 | 96.4 | Plus |
| 3L | 28110227 | 3L | 21915260..21915424 | 375..539 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 538..661 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 163..281 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 8..108 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 280..380 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21920901..21920987 | 658..744 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 106..164 | 295 | 100 | Plus |
| 3L | 28110227 | 3L | 21925196..21925261 | 1038..1102 | 185 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:56 has no hits.
UFO05419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:41 Download gff for
UFO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 808..1907 | 8..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:15 Download gff for
UFO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1940 | 8..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:45 Download gff for
UFO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1940 | 8..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:45 Download gff for
UFO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21915102..21915195 | 282..375 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 376..539 | 100 | -> | Plus |
| 3L | 21915536..21915655 | 540..659 | 100 | -> | Plus |
| 3L | 21920903..21920987 | 660..744 | 100 | -> | Plus |
| 3L | 21907821..21907920 | 8..107 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 108..164 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 165..281 | 100 | -> | Plus |
| 3L | 21921054..21921327 | 745..1018 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:15 Download gff for
UFO05419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900921..21901020 | 8..107 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 108..164 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 165..281 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 282..375 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 376..539 | 100 | -> | Plus |
| arm_3L | 21908636..21908755 | 540..659 | 100 | -> | Plus |
| arm_3L | 21914003..21914087 | 660..744 | 100 | -> | Plus |
| arm_3L | 21914154..21914427 | 745..1018 | 95 | -> | Plus |
