UFO05420.5prime Sequence
1115 bp (979 high quality bases) assembled on 2009-07-06
> UFO05420.5prime
CAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTGCCAGCGAG
CTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCACATCCTTTC
GCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTCGGGCACCT
CCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCACTGCCATT
GCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTCGTCCCGTT
GGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGGCAGCAGTC
CGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGCGTACATCG
ACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAGCTGGA
CCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACGCTCGT
ATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGGGACTG
ATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACCAAGGG
CTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGACGAGG
ATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCATGTGC
GAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTATTTGCC
GTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGAAATAT
TTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGATCGCAGTG
GCCCGTGACTCAGCCGTGCAACCCGCTGGAGTAGCAGTGGTCGTAGAGGG
AGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAACAGCAAAC
TGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCAGACCGTTGA
GGAATTCTTGAACTTAGTCAATAGCAAGCAAGCTTTCTAGAACATTCGTT
TGGCGCGCGGGCCAGGTTAGTGTCATATCATAATCATATCATATTCATAT
CCCACTAGCTAGAGATCTGGTCATGACTATGGCTGAATTCCCACAATAAA
AGTCCAGGCGCACTG
UFO05420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RA | 1793 | CG9441-RA | 175..1146 | 8..977 | 4720 | 99.3 | Plus |
| Pu-RC | 1744 | CG9441-RC | 478..1097 | 360..977 | 2960 | 98.9 | Plus |
| Pu-RB | 1625 | CG9441-RB | 359..978 | 360..977 | 2960 | 98.9 | Plus |
| Pu-RC | 1744 | CG9441-RC | 174..479 | 8..313 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21179292..21179645 | 8..361 | 1770 | 100 | Plus |
| 2R | 25286936 | 2R | 21179935..21180147 | 358..570 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 21181419..21181585 | 570..736 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 21181644..21181761 | 736..853 | 495 | 98.3 | Plus |
| 2R | 25286936 | 2R | 21181836..21181961 | 854..977 | 485 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:17 has no hits.
UFO05420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:42 Download gff for
UFO05420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RA | 168..1145 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:16 Download gff for
UFO05420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RA | 169..1146 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:19 Download gff for
UFO05420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RA | 169..1146 | 1..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:19 Download gff for
UFO05420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21179286..21179644 | 1..360 | 99 | -> | Plus |
| 2R | 21179938..21180147 | 361..570 | 100 | -> | Plus |
| 2R | 21181420..21181585 | 571..736 | 100 | -> | Plus |
| 2R | 21181645..21181761 | 737..853 | 98 | -> | Plus |
| 2R | 21181836..21181961 | 854..977 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:16 Download gff for
UFO05420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17066791..17067149 | 1..360 | 99 | -> | Plus |
| arm_2R | 17067443..17067652 | 361..570 | 100 | -> | Plus |
| arm_2R | 17068925..17069090 | 571..736 | 100 | -> | Plus |
| arm_2R | 17069150..17069266 | 737..853 | 98 | -> | Plus |
| arm_2R | 17069341..17069466 | 854..977 | 96 | | Plus |
