UFO05421.5prime Sequence
1109 bp (991 high quality bases) assembled on 2009-07-06
> UFO05421.5prime
CAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTACCGGCAGT
GATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGCGAAGCCCC
AACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTTCGCCGAGA
TCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGTACGGTCCG
CAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGATAATGCGGG
AACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGCATTCCTCG
CGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTGATGGCTGC
TACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATCATGAAGCA
GTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTCGTCCATTA
TTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACATGATCATT
GGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCGGTTATTAG
GACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGAAAGGAACC
GGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTATTGAGAGG
GTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGCAAGCATTT
AATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAAGTACTTCT
TCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCGGGTCCCAG
GAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTACTTGTTCAT
CAAGGCCGCCCAGTCCTCGTATTTCGAGGACAGAAGTACTACGACGAGGG
TGCTGGATGTGCTGTTGAAGAAGCCGAACTTTGAGTACCTGGAAGGTTAA
TGGCTCGCACCATGTGCACATGAACGATCAGAGGCCTCATTGCACCGGTC
AACAACTTTATCCAGCGCCTTCGGACGGCGGCAGCGGCTGCATCCCGCCA
GAAGCAAGAAGCAAGGAAGCAGCTTGCAGCTTTCTATAACCATTCGTTGG
CCGCGGCCA
UFO05421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11309-RA | 1664 | CG11309-RA | 259..1305 | 9..1054 | 5075 | 99.3 | Plus |
| CG11309-RF | 2125 | CG11309-RF | 360..1275 | 140..1054 | 4420 | 99.2 | Plus |
| CG11309-RE | 1206 | CG11309-RE | 136..1051 | 140..1054 | 4420 | 99.2 | Plus |
| CG11309-RF | 2125 | CG11309-RF | 259..360 | 9..110 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21302635..21303549 | 1054..141 | 4260 | 98.9 | Minus |
| 3L | 28110227 | 3L | 21303910..21304011 | 110..9 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 21305088..21305198 | 150..260 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:58:38 has no hits.
UFO05421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:43 Download gff for
UFO05421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RA | 247..1317 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:36 Download gff for
UFO05421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RA | 252..1322 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:33 Download gff for
UFO05421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11309-RA | 252..1322 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:33 Download gff for
UFO05421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21302605..21303549 | 141..1076 | 98 | <- | Minus |
| 3L | 21303808..21303837 | 111..140 | 100 | <- | Minus |
| 3L | 21303910..21304016 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:36 Download gff for
UFO05421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21295705..21296649 | 141..1076 | 98 | <- | Minus |
| arm_3L | 21296908..21296937 | 111..140 | 100 | <- | Minus |
| arm_3L | 21297010..21297116 | 1..110 | 96 | | Minus |
