UFO05423.5prime Sequence
557 bp (481 high quality bases) assembled on 2009-07-06
> UFO05423.5prime
CAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTCCTGCGGCC
ACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTGGGCGAAGG
TGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGGCGAGGCTG
TGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAGCGAACTCG
GTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAGCATATCCT
CCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACATATTCCTGG
AATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAGACGTGGGA
ATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTGTCCGGACT
CAATTACCTGCATCAGCGTGGATCGCTCATCGGGATCTGAAGCCGGAAAA
TCTGGTTGCTTGACGAGCATGACAACGTGAAATTATCGGGACTTTGGCAT
GGCTAATTATGTTTAGGTGCAAGGGCAAAGGAAGCCGACTGGCTGGACAA
ACGCTGC
UFO05423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grp-RA | 2563 | CG17161-RA | 739..1282 | 8..557 | 2510 | 98 | Plus |
| grp-RB | 2234 | CG17161-RB | 410..953 | 8..557 | 2510 | 98 | Plus |
| grp-RC | 2344 | CG17161-RC | 520..1063 | 8..557 | 2510 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16691901..16692124 | 113..336 | 1120 | 100 | Plus |
| 2L | 23513712 | 2L | 16696583..16696752 | 335..505 | 680 | 97.1 | Plus |
| 2L | 23513712 | 2L | 16691088..16691193 | 8..113 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:37 has no hits.
UFO05423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:33 Download gff for
UFO05423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grp-RA | 944..1495 | 1..557 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:31 Download gff for
UFO05423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grp-RC | 512..1063 | 1..557 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:02 Download gff for
UFO05423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grp-RC | 512..1063 | 1..557 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:02 Download gff for
UFO05423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16691901..16692124 | 113..336 | 100 | -> | Plus |
| 2L | 16696585..16696762 | 337..516 | 96 | -> | Plus |
| 2L | 16691080..16691192 | 1..112 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:31 Download gff for
UFO05423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16691080..16691192 | 1..112 | 97 | -> | Plus |
| arm_2L | 16691901..16692124 | 113..336 | 100 | -> | Plus |
| arm_2L | 16696585..16696762 | 337..516 | 96 | -> | Plus |
