UFO05424.5prime Sequence
1070 bp (952 high quality bases) assembled on 2009-07-06
> UFO05424.5prime
CAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGCCGCCGCAA
ACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCCATACCGCC
CGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAACCAATTGG
ACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCGAACAGTGC
AGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTCGACGAGTC
ATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACCAAACAAAA
GCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGAGGCCAAAA
GTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAGCAATCGAT
GGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTTCAGCGATC
AGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTACGTCGCCTG
AAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAATTCATCATT
TATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGGCCGTAGCA
GGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCATCAACAGCG
CAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCCAAAAAGCG
TGCTCTGAACCACTCGTTGCGCGCTCATACACCGCCGCCCAGTTTGGCCA
AGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCAAGCCCAAG
ATCAAAGGCGAAGAGATTATCCAGTCGCGGACGCAACACCGATCCCGGAT
TTGGGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGTGTGGTGAAGGTGA
GGAGGACGCGTTTACCAGTGCCCAGTGTCCTGACTGCAAACCGCCTCCCA
TGGCGACGAGTTGTCAGAGTGTATCCAAGAAGGCGGTATCTTCAGCGAGG
GCGTCAGATTCTGGGCAGCCCGGGGTCCATCCGTCGGTCTACTTTCCGTC
GCTTCATCGGAGGACTCCGA
UFO05424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-RC | 2159 | CG1745-RC | 292..1366 | 9..1070 | 4875 | 97.9 | Plus |
| HP5-RA | 1744 | CG1745-RA | 292..1366 | 9..1070 | 4875 | 97.9 | Plus |
| HP5-RB | 3720 | CG1745-RB | 292..1366 | 9..1070 | 4875 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11455281..11456213 | 123..1046 | 3975 | 98 | Plus |
| X | 23542271 | X | 11455077..11455191 | 9..123 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:45 has no hits.
UFO05424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:34 Download gff for
UFO05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-RA | 267..1348 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:36 Download gff for
UFO05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RB | 284..1365 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:07 Download gff for
UFO05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RB | 284..1365 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:07 Download gff for
UFO05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11455069..11455191 | 1..123 | 96 | -> | Plus |
| X | 11455282..11456240 | 124..1069 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:36 Download gff for
UFO05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11349102..11349224 | 1..123 | 96 | -> | Plus |
| arm_X | 11349315..11350273 | 124..1069 | 97 | | Plus |
